MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.6 nTPM
HPA Brain:159.8 nTPM
GTEx:52.6 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:83.0 nTPM
Mouse:35.6 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 159.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.8
2828 Female, age 72, unknown 111.0
1870 Female, age 42, unknown 102.3
2586 Male, age 75, left hemisphere 88.9
1827 Male, age 72, unknown 88.3
2666 Male, age 74, left hemisphere 88.1
2411 Female, age 72, unknown 72.4
1830 Male, age 51, unknown 72.0
1833 Male, age 53, unknown 66.6
2219 Male, age 76, both hemispheres 63.2
2019 Male, age 18, unknown 15.4
Dorsal raphe nucleus
nTPM: 125.9
2047 Male, age 72, unknown 168.6
2298 Female, age 72, unknown 139.1
2016 Female, age 72, unknown 133.9
2750 Male, age 76, both hemispheres 98.5
1828 Male, age 53, unknown 89.6
Inferior colliculus
nTPM: 65.2
1848 Female, age 42, unknown 83.1
2849 Male, age 72, unknown 65.8
2097 Female, age 72, unknown 56.5
1890 Male, age 53, unknown 55.4
Median raphe nucleus
nTPM: 159.8
2220 Male, age 76, midline 159.8
Periaquaductal grey, anterior
nTPM: 126.6
1947 Male, age 18, unknown 163.2
1795 Male, age 51, unknown 133.0
2502 Female, age 75, unknown 83.7
Periaquaductal grey, dorsal
nTPM: 105.1
1840 Male, age 53, unknown 132.5
2850 Male, age 76, both hemispheres 125.1
1831 Male, age 72, unknown 94.5
2464 Female, age 72, unknown 68.3
Periaquaductal grey, lateral
nTPM: 127.3
2053 Male, age 18, unknown 170.3
2140 Male, age 76, both hemispheres 118.3
2272 Male, age 74, both hemispheres 93.1
Pretectal area
nTPM: 83.8
2825 Male, age 18, unknown 170.0
2273 Male, age 74, both hemispheres 138.5
2224 Female, age 72, unknown 135.4
2407 Male, age 75, both hemispheres 96.0
2667 Female, age 75, unknown 88.6
2316 Male, age 76, right hemisphere 78.0
1944 Female, age 72, unknown 56.8
1815 Male, age 53, unknown 54.1
1816 Male, age 51, unknown 46.8
2007 Male, age 72, unknown 33.0
1817 Female, age 42, unknown 24.6
Red nucleus
nTPM: 40.6
2584 Male, age 75, left hemisphere 68.1
2725 Female, age 75, unknown 65.9
2503 Female, age 72, unknown 49.2
2769 Male, age 72, unknown 44.9
2227 Male, age 72, unknown 43.7
2588 Male, age 74, left hemisphere 38.1
1954 Female, age 42, unknown 36.8
1821 Female, age 72, unknown 36.5
1865 Male, age 51, unknown 34.1
1904 Male, age 53, unknown 28.8
2823 Male, age 76, right hemisphere 25.5
2785 Male, age 18, unknown 16.2
Substantia nigra
nTPM: 111.6
2699 Male, age 18, unknown 193.5
1916 Female, age 42, unknown 160.1
1851 Male, age 51, unknown 124.5
1941 Male, age 53, unknown 116.5
2241 Male, age 72, unknown 108.7
2590 Female, age 75, unknown 101.3
2583 Male, age 75, right hemisphere 93.9
2409 Female, age 72, unknown 82.3
2665 Male, age 74, both hemispheres 75.3
1889 Female, age 72, unknown 59.5
Superior colliculus
nTPM: 80.6
2664 Male, age 75, both hemispheres 117.7
1796 Male, age 53, unknown 111.4
2261 Male, age 18, unknown 95.7
1839 Male, age 51, unknown 92.1
2587 Male, age 74, left hemisphere 84.1
1913 Female, age 42, unknown 76.6
1995 Male, age 72, unknown 72.3
2668 Female, age 75, unknown 55.1
2087 Female, age 72, unknown 53.2
1895 Male, age 76, right hemisphere 47.5
Ventral tegmental area
nTPM: 118.4
2021 Male, age 53, unknown 159.7
1915 Female, age 42, unknown 155.2
1942 Male, age 51, unknown 123.3
2223 Female, age 72, unknown 103.1
2218 Male, age 76, both hemispheres 88.0
2410 Female, age 72, unknown 81.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.6
Samples: 139

Max nTPM: 114.3
Min nTPM: 17.6
Std nTPM: 15.2
Median nTPM: 50.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 114.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 100.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 96.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 95.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 87.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 85.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 84.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 76.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 71.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 70.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.8
FF:10158-103A5 76 years, female 57.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.0
Samples: 4

Max nTPM: 102.5
Min nTPM: 57.5
Sample A Female 98.4
Sample B Female 73.7
Sample C Male 102.5
Sample D Male 57.5
Midbrain
nTPM: 68.8
Samples: 4

Max nTPM: 148.4
Min nTPM: 34.9
Sample A Female 148.4
Sample B Female 34.9
Sample C Male 51.6
Sample D Male 40.2
Periaqueductal gray
nTPM: 51.8
Samples: 3

Max nTPM: 67.4
Min nTPM: 34.9
Sample B Female 34.9
Sample C Male 67.4
Sample D Male 53.0
Superior colliculi
nTPM: 61.9
Samples: 4

Max nTPM: 92.9
Min nTPM: 45.8
Sample A Female 57.5
Sample B Female 92.9
Sample C Male 45.8
Sample D Male 51.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.6
Samples: 4

Max nTPM: 38.3
Min nTPM: 31.5
Sample A Male 31.5
Sample B Male 37.3
Sample C Female 38.3
Sample D Female 35.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
71608207 Antisense, RP_050927_01_B03, Mouse strain C57BL/6J (56 days, male) 2.1
654928 Antisense, RP_040922_01_B02, Mouse strain C57BL/6J (56 days, male) 0.1

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