MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.1 nTPM
HPA Brain:26.0 nTPM
GTEx:30.1 nTPM
FANTOM5:73.7 Scaled Tags Per Million
Pig:196.0 nTPM
Mouse:112.5 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.1
2828 Female, age 72, unknown 24.4
1870 Female, age 42, unknown 24.2
2019 Male, age 18, unknown 23.1
1827 Male, age 72, unknown 23.0
1830 Male, age 51, unknown 23.0
2411 Female, age 72, unknown 22.5
2586 Male, age 75, left hemisphere 21.2
1833 Male, age 53, unknown 20.4
2666 Male, age 74, left hemisphere 19.8
2219 Male, age 76, both hemispheres 19.7
Dorsal raphe nucleus
nTPM: 25.0
2298 Female, age 72, unknown 29.2
1828 Male, age 53, unknown 26.1
2016 Female, age 72, unknown 26.1
2750 Male, age 76, both hemispheres 22.1
2047 Male, age 72, unknown 21.6
Inferior colliculus
nTPM: 22.8
2097 Female, age 72, unknown 28.5
1890 Male, age 53, unknown 22.7
1848 Female, age 42, unknown 22.2
2849 Male, age 72, unknown 17.8
Median raphe nucleus
nTPM: 23.5
2220 Male, age 76, midline 23.5
Periaquaductal grey, anterior
nTPM: 25.0
2502 Female, age 75, unknown 28.5
1947 Male, age 18, unknown 24.9
1795 Male, age 51, unknown 21.7
Periaquaductal grey, dorsal
nTPM: 22.8
2464 Female, age 72, unknown 23.6
2850 Male, age 76, both hemispheres 23.3
1831 Male, age 72, unknown 23.0
1840 Male, age 53, unknown 21.5
Periaquaductal grey, lateral
nTPM: 21.9
2053 Male, age 18, unknown 25.3
2272 Male, age 74, both hemispheres 20.2
2140 Male, age 76, both hemispheres 20.0
Pretectal area
nTPM: 23.0
1944 Female, age 72, unknown 25.7
1817 Female, age 42, unknown 24.1
1816 Male, age 51, unknown 24.0
2273 Male, age 74, both hemispheres 23.7
1815 Male, age 53, unknown 23.5
2224 Female, age 72, unknown 23.5
2667 Female, age 75, unknown 23.1
2316 Male, age 76, right hemisphere 22.9
2007 Male, age 72, unknown 22.1
2825 Male, age 18, unknown 20.6
2407 Male, age 75, both hemispheres 19.7
Red nucleus
nTPM: 24.4
1821 Female, age 72, unknown 30.2
1954 Female, age 42, unknown 28.6
1904 Male, age 53, unknown 26.4
2503 Female, age 72, unknown 25.3
1865 Male, age 51, unknown 24.9
2725 Female, age 75, unknown 24.6
2227 Male, age 72, unknown 23.8
2823 Male, age 76, right hemisphere 22.9
2769 Male, age 72, unknown 22.2
2584 Male, age 75, left hemisphere 21.8
2785 Male, age 18, unknown 21.3
2588 Male, age 74, left hemisphere 20.4
Substantia nigra
nTPM: 26.0
2241 Male, age 72, unknown 35.4
1916 Female, age 42, unknown 34.3
1851 Male, age 51, unknown 27.5
1889 Female, age 72, unknown 25.9
1941 Male, age 53, unknown 25.4
2699 Male, age 18, unknown 24.0
2583 Male, age 75, right hemisphere 23.2
2409 Female, age 72, unknown 22.0
2665 Male, age 74, both hemispheres 21.7
2590 Female, age 75, unknown 21.0
Superior colliculus
nTPM: 23.4
1995 Male, age 72, unknown 26.8
2261 Male, age 18, unknown 25.8
1913 Female, age 42, unknown 24.4
2668 Female, age 75, unknown 24.3
2087 Female, age 72, unknown 24.1
1796 Male, age 53, unknown 23.0
2664 Male, age 75, both hemispheres 22.4
1839 Male, age 51, unknown 22.0
2587 Male, age 74, left hemisphere 22.0
1895 Male, age 76, right hemisphere 19.0
Ventral tegmental area
nTPM: 24.5
2410 Female, age 72, unknown 26.8
1915 Female, age 42, unknown 25.8
1942 Male, age 51, unknown 24.7
2021 Male, age 53, unknown 24.2
2223 Female, age 72, unknown 24.2
2218 Male, age 76, both hemispheres 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.1
Samples: 139

Max nTPM: 57.4
Min nTPM: 16.4
Std nTPM: 7.8
Median nTPM: 28.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 57.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 54.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 54.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 51.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 46.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 46.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 45.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 44.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 44.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 44.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 44.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.7
FF:10158-103A5 76 years, female 73.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 196.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 194.3
Samples: 4

Max nTPM: 259.4
Min nTPM: 137.9
Sample A Female 259.4
Sample B Female 191.0
Sample C Male 188.7
Sample D Male 137.9
Midbrain
nTPM: 193.1
Samples: 4

Max nTPM: 239.8
Min nTPM: 155.3
Sample A Female 239.8
Sample B Female 215.6
Sample C Male 155.3
Sample D Male 161.6
Periaqueductal gray
nTPM: 169.9
Samples: 3

Max nTPM: 181.7
Min nTPM: 160.5
Sample B Female 167.5
Sample C Male 181.7
Sample D Male 160.5
Superior colliculi
nTPM: 196.1
Samples: 4

Max nTPM: 220.5
Min nTPM: 178.2
Sample A Female 201.6
Sample B Female 220.5
Sample C Male 178.2
Sample D Male 183.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.5
Samples: 4

Max nTPM: 117.2
Min nTPM: 107.7
Sample A Male 113.1
Sample B Male 107.7
Sample C Female 117.2
Sample D Female 112.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
74800903 Antisense, RP_060315_02_A04, Mouse strain C57BL/6J (56 days, male) 1.9
386004 Antisense, RP_040625_01_H03, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org