HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:47.4 nTPM
HPA Brain:34.5 nTPM
GTEx:47.4 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:21.8 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048286
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.5
Sample id Sample description nTPM
Hippocampus
nTPM: 21.3
1898 Male, age 80, left hemisphere 30.9
2529 Female, age 94, left hemisphere 21.6
1855 Male, age 76, left hemisphere 20.1
2148 Female, age 91, left hemisphere 19.6
2621 Female, age 67, right hemisphere 19.5
1911 Female, age 85, right hemisphere 16.1
Dentate gyrus
nTPM: 21.1
1927 Female, age 91, both hemispheres 26.7
2010 Male, age 76, both hemispheres 24.1
2246 Female, age 85, both hemispheres 20.7
2530 Female, age 94, left hemisphere 19.4
2531 Female, age 67, both hemispheres 18.8
2528 Male, age 74, both hemispheres 17.1
Entorhinal gyrus
nTPM: 26.3
2613 Female, age 94, left hemisphere 33.0
1938 Female, age 85, left hemisphere 30.3
2764 Male, age 80, right hemisphere 29.3
1787 Male, age 76, left hemisphere 26.5
2686 Male, age 75, right hemisphere 20.7
2117 Female, age 91, right hemisphere 17.8
Hippocampus, CA1
nTPM: 25.7
2749 Male, age 80, left hemisphere 38.9
2527 Male, age 74, both hemispheres 28.5
1873 Female, age 85, both hemispheres 23.5
2045 Male, age 76, both hemispheres 19.6
2082 Female, age 91, right hemisphere 18.0
Hippocampus, CA2
nTPM: 24.0
1892 Male, age 76, both hemispheres 32.2
2249 Male, age 74, both hemispheres 30.8
1963 Male, age 80, left hemisphere 28.2
1940 Female, age 85, left hemisphere 17.9
2437 Female, age 94, left hemisphere 17.8
2113 Female, age 91, right hemisphere 17.0
Hippocampus, CA3
nTPM: 23.3
2137 Male, age 80, left hemisphere 29.3
1867 Male, age 76, both hemispheres 28.0
2436 Male, age 74, both hemispheres 24.9
2620 Female, age 94, left hemisphere 22.4
1891 Female, age 85, both hemispheres 20.2
2861 Female, age 67, both hemispheres 15.1
Parahippocampal cortex
nTPM: 25.1
1850 Male, age 80, both hemispheres 39.5
1990 Female, age 91, right hemisphere 29.6
1933 Female, age 85, both hemispheres 26.4
2245 Female, age 91, both hemispheres 25.2
2692 Male, age 74, both hemispheres 24.2
2693 Female, age 94, both hemispheres 22.7
2250 Female, age 67, right hemisphere 22.6
2018 Male, age 76, both hemispheres 20.8
2532 Female, age 72, left hemisphere 20.4
2622 Female, age 67, right hemisphere 19.4
Perirhinal gyrus
nTPM: 34.5
1794 Male, age 80, right hemisphere 39.9
1847 Female, age 91, left hemisphere 39.5
1841 Female, age 85, right hemisphere 37.4
2521 Female, age 94, right hemisphere 29.1
2848 Male, age 76, right hemisphere 26.7
Subiculum
nTPM: 23.9
1901 Male, age 80, both hemispheres 28.6
1977 Female, age 85, both hemispheres 28.4
2438 Female, age 94, left hemisphere 27.5
2619 Male, age 74, both hemispheres 21.3
2729 Female, age 91, right hemisphere 19.0
2042 Male, age 76, both hemispheres 18.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.4
Samples: 197

Max nTPM: 145.1
Min nTPM: 14.8
Std nTPM: 20.0
Median nTPM: 41.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 145.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 117.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 102.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 101.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 100.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 97.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 96.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 93.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 90.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 88.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 86.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.2
FF:10169-103B7 60 years, female 35.3
FF:10153-102I9 76 years, female 23.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Subiculum
nTPM: 10.0
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.0
Sample A Female 9.9
Sample B Female 9.1
Sample C Male 11.9
Sample D Male 9.0
Dorsal hippocampus
nTPM: 13.7
Samples: 4

Max nTPM: 14.1
Min nTPM: 13.3
Sample A Female 13.7
Sample B Female 13.8
Sample C Male 14.1
Sample D Male 13.3
Entorhinal cortex
nTPM: 10.7
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.1
Sample A Female 10.1
Sample B Female 11.8
Sample C Male 9.1
Sample D Male 11.7
Ventral hippocampus
nTPM: 11.4
Samples: 4

Max nTPM: 13.5
Min nTPM: 8.5
Sample A Female 12.0
Sample B Female 11.6
Sample C Male 8.5
Sample D Male 13.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 22.2
Min nTPM: 19.5
Sample A Male 21.8
Sample B Male 22.2
Sample C Female 22.2
Sample D Female 19.5
Hippocampal formation
nTPM: 21.8
Samples: 4

Max nTPM: 25.7
Min nTPM: 19.9
Sample A Male 25.7
Sample B Male 19.9
Sample C Female 20.8
Sample D Female 20.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
100146097 Antisense, RP_110421_02_B05, Mouse strain C57BL/6J (56 days, male) 0.5
77414919 Antisense, RP_070205_01_G08, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org