MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.0 nTPM
HPA Brain:21.8 nTPM
GTEx:45.0 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:8.7 nTPM
Mouse:27.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
2019 Male, age 18, unknown 21.8
2411 Female, age 72, unknown 19.8
2219 Male, age 76, both hemispheres 19.5
1870 Female, age 42, unknown 18.7
1827 Male, age 72, unknown 18.2
2666 Male, age 74, left hemisphere 15.1
1833 Male, age 53, unknown 14.6
1830 Male, age 51, unknown 14.0
2586 Male, age 75, left hemisphere 13.9
2828 Female, age 72, unknown 12.3
Dorsal raphe nucleus
nTPM: 18.5
2298 Female, age 72, unknown 23.2
2750 Male, age 76, both hemispheres 19.7
1828 Male, age 53, unknown 18.8
2047 Male, age 72, unknown 17.5
2016 Female, age 72, unknown 13.2
Inferior colliculus
nTPM: 18.4
2097 Female, age 72, unknown 23.1
1890 Male, age 53, unknown 17.6
1848 Female, age 42, unknown 16.9
2849 Male, age 72, unknown 16.1
Median raphe nucleus
nTPM: 20.8
2220 Male, age 76, midline 20.8
Periaquaductal grey, anterior
nTPM: 18.8
1947 Male, age 18, unknown 22.5
1795 Male, age 51, unknown 18.8
2502 Female, age 75, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 16.7
1840 Male, age 53, unknown 19.7
2464 Female, age 72, unknown 17.0
2850 Male, age 76, both hemispheres 15.9
1831 Male, age 72, unknown 14.3
Periaquaductal grey, lateral
nTPM: 15.1
2053 Male, age 18, unknown 15.7
2272 Male, age 74, both hemispheres 15.0
2140 Male, age 76, both hemispheres 14.8
Pretectal area
nTPM: 20.5
1944 Female, age 72, unknown 27.0
1816 Male, age 51, unknown 26.1
2007 Male, age 72, unknown 25.7
1817 Female, age 42, unknown 22.6
1815 Male, age 53, unknown 20.5
2224 Female, age 72, unknown 20.2
2667 Female, age 75, unknown 19.4
2273 Male, age 74, both hemispheres 19.1
2407 Male, age 75, both hemispheres 15.3
2825 Male, age 18, unknown 14.8
2316 Male, age 76, right hemisphere 14.5
Red nucleus
nTPM: 16.2
1821 Female, age 72, unknown 22.9
2725 Female, age 75, unknown 18.5
2503 Female, age 72, unknown 17.3
2785 Male, age 18, unknown 16.9
1865 Male, age 51, unknown 16.1
1954 Female, age 42, unknown 15.8
2588 Male, age 74, left hemisphere 15.3
2823 Male, age 76, right hemisphere 15.2
2227 Male, age 72, unknown 14.4
2769 Male, age 72, unknown 14.2
1904 Male, age 53, unknown 14.0
2584 Male, age 75, left hemisphere 13.9
Substantia nigra
nTPM: 21.8
2241 Male, age 72, unknown 35.6
1916 Female, age 42, unknown 26.4
1889 Female, age 72, unknown 24.3
1851 Male, age 51, unknown 23.1
2409 Female, age 72, unknown 22.7
1941 Male, age 53, unknown 22.3
2583 Male, age 75, right hemisphere 18.3
2590 Female, age 75, unknown 17.2
2699 Male, age 18, unknown 14.9
2665 Male, age 74, both hemispheres 13.8
Superior colliculus
nTPM: 17.4
2668 Female, age 75, unknown 23.4
1796 Male, age 53, unknown 19.3
1895 Male, age 76, right hemisphere 19.3
2261 Male, age 18, unknown 18.8
2087 Female, age 72, unknown 17.4
2587 Male, age 74, left hemisphere 16.2
1913 Female, age 42, unknown 16.0
2664 Male, age 75, both hemispheres 16.0
1839 Male, age 51, unknown 15.4
1995 Male, age 72, unknown 12.1
Ventral tegmental area
nTPM: 20.4
2410 Female, age 72, unknown 23.9
2218 Male, age 76, both hemispheres 21.8
1915 Female, age 42, unknown 21.4
2223 Female, age 72, unknown 18.8
1942 Male, age 51, unknown 18.4
2021 Male, age 53, unknown 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.0
Samples: 139

Max nTPM: 96.4
Min nTPM: 16.9
Std nTPM: 14.2
Median nTPM: 41.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 96.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 94.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 87.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 83.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 80.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 74.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 71.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 70.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 69.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 66.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.1
FF:10158-103A5 76 years, female 12.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.1
Samples: 4

Max nTPM: 9.6
Min nTPM: 3.9
Sample A Female 9.6
Sample B Female 6.9
Sample C Male 8.1
Sample D Male 3.9
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 10.4
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 8.0
Sample C Male 10.4
Sample D Male 10.4
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 7.2
Min nTPM: 6.2
Sample B Female 6.3
Sample C Male 7.2
Sample D Male 6.2
Superior colliculi
nTPM: 8.8
Samples: 4

Max nTPM: 11.1
Min nTPM: 6.4
Sample A Female 9.3
Sample B Female 6.4
Sample C Male 11.1
Sample D Male 8.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.5
Samples: 4

Max nTPM: 28.2
Min nTPM: 26.5
Sample A Male 26.5
Sample B Male 27.0
Sample C Female 28.2
Sample D Female 28.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
100146097 Antisense, RP_110421_02_B05, Mouse strain C57BL/6J (56 days, male) 0.3
77414919 Antisense, RP_070205_01_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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