MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:158.8 nTPM
HPA Brain:188.8 nTPM
GTEx:158.8 nTPM
FANTOM5:535.2 Scaled Tags Per Million
Pig:163.4 nTPM
Mouse:29.8 nTPM
Allen mouse:13.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 188.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 164.8
2666 Male, age 74, left hemisphere 182.7
1870 Female, age 42, unknown 179.3
2586 Male, age 75, left hemisphere 172.2
2219 Male, age 76, both hemispheres 167.8
1833 Male, age 53, unknown 165.8
1830 Male, age 51, unknown 162.9
2828 Female, age 72, unknown 161.1
1827 Male, age 72, unknown 155.0
2019 Male, age 18, unknown 152.9
2411 Female, age 72, unknown 148.6
Dorsal raphe nucleus
nTPM: 132.4
1828 Male, age 53, unknown 147.2
2016 Female, age 72, unknown 140.4
2750 Male, age 76, both hemispheres 137.1
2047 Male, age 72, unknown 130.1
2298 Female, age 72, unknown 107.4
Inferior colliculus
nTPM: 154.3
2849 Male, age 72, unknown 195.3
1890 Male, age 53, unknown 155.1
1848 Female, age 42, unknown 144.0
2097 Female, age 72, unknown 122.6
Median raphe nucleus
nTPM: 169.5
2220 Male, age 76, midline 169.5
Periaquaductal grey, anterior
nTPM: 152.9
2502 Female, age 75, unknown 169.3
1947 Male, age 18, unknown 149.9
1795 Male, age 51, unknown 139.5
Periaquaductal grey, dorsal
nTPM: 155.8
2850 Male, age 76, both hemispheres 186.6
1831 Male, age 72, unknown 153.9
2464 Female, age 72, unknown 145.2
1840 Male, age 53, unknown 137.4
Periaquaductal grey, lateral
nTPM: 139.6
2140 Male, age 76, both hemispheres 154.1
2053 Male, age 18, unknown 137.6
2272 Male, age 74, both hemispheres 127.0
Pretectal area
nTPM: 152.1
1817 Female, age 42, unknown 180.0
1815 Male, age 53, unknown 173.8
2407 Male, age 75, both hemispheres 169.6
2007 Male, age 72, unknown 164.1
1816 Male, age 51, unknown 162.7
1944 Female, age 72, unknown 160.0
2825 Male, age 18, unknown 157.5
2273 Male, age 74, both hemispheres 133.1
2224 Female, age 72, unknown 127.9
2667 Female, age 75, unknown 123.5
2316 Male, age 76, right hemisphere 121.2
Red nucleus
nTPM: 188.8
2503 Female, age 72, unknown 253.0
2725 Female, age 75, unknown 226.6
2588 Male, age 74, left hemisphere 212.9
1865 Male, age 51, unknown 205.1
1954 Female, age 42, unknown 178.2
2823 Male, age 76, right hemisphere 177.7
1904 Male, age 53, unknown 176.1
2584 Male, age 75, left hemisphere 172.2
2227 Male, age 72, unknown 169.8
1821 Female, age 72, unknown 166.3
2769 Male, age 72, unknown 165.3
2785 Male, age 18, unknown 162.5
Substantia nigra
nTPM: 153.0
2699 Male, age 18, unknown 191.5
1941 Male, age 53, unknown 162.5
1889 Female, age 72, unknown 159.5
2665 Male, age 74, both hemispheres 159.2
1916 Female, age 42, unknown 154.9
2590 Female, age 75, unknown 150.7
1851 Male, age 51, unknown 150.1
2583 Male, age 75, right hemisphere 142.9
2241 Male, age 72, unknown 132.3
2409 Female, age 72, unknown 126.4
Superior colliculus
nTPM: 152.3
2587 Male, age 74, left hemisphere 178.3
1913 Female, age 42, unknown 170.0
1995 Male, age 72, unknown 167.7
1895 Male, age 76, right hemisphere 154.2
1839 Male, age 51, unknown 148.0
2261 Male, age 18, unknown 146.7
1796 Male, age 53, unknown 144.7
2087 Female, age 72, unknown 142.4
2668 Female, age 75, unknown 138.7
2664 Male, age 75, both hemispheres 132.6
Ventral tegmental area
nTPM: 151.3
2223 Female, age 72, unknown 169.2
2218 Male, age 76, both hemispheres 166.5
1915 Female, age 42, unknown 151.3
1942 Male, age 51, unknown 145.9
2410 Female, age 72, unknown 141.3
2021 Male, age 53, unknown 133.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 158.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 158.8
Samples: 139

Max nTPM: 278.4
Min nTPM: 96.3
Std nTPM: 33.9
Median nTPM: 155.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 278.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 270.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 247.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 243.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 233.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 227.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 218.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 216.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 213.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 212.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 212.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 535.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 535.2
FF:10158-103A5 76 years, female 535.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 163.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 143.7
Samples: 4

Max nTPM: 162.7
Min nTPM: 121.2
Sample A Female 146.8
Sample B Female 121.2
Sample C Male 144.2
Sample D Male 162.7
Midbrain
nTPM: 163.4
Samples: 4

Max nTPM: 250.3
Min nTPM: 122.1
Sample A Female 250.3
Sample B Female 147.1
Sample C Male 134.0
Sample D Male 122.1
Periaqueductal gray
nTPM: 136.2
Samples: 3

Max nTPM: 148.9
Min nTPM: 126.4
Sample B Female 133.2
Sample C Male 148.9
Sample D Male 126.4
Superior colliculi
nTPM: 145.3
Samples: 4

Max nTPM: 155.5
Min nTPM: 119.9
Sample A Female 155.5
Sample B Female 119.9
Sample C Male 152.5
Sample D Male 153.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 32.1
Min nTPM: 26.4
Sample A Male 26.4
Sample B Male 32.1
Sample C Female 31.3
Sample D Female 29.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.0
68442979 Antisense, RP_050111_01_B06, Mouse strain C57BL/6J (56 days, male) 13.0

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