MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:409.3 nTPM
HPA Brain:603.6 nTPM
GTEx:409.3 nTPM
FANTOM5:717.1 Scaled Tags Per Million
Pig:600.9 nTPM
Mouse:433.4 nTPM
Allen mouse:16.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 603.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 556.0
2666 Male, age 74, left hemisphere 652.3
2411 Female, age 72, unknown 632.1
2586 Male, age 75, left hemisphere 627.3
2019 Male, age 18, unknown 570.6
1870 Female, age 42, unknown 564.9
1827 Male, age 72, unknown 532.7
1830 Male, age 51, unknown 532.0
1833 Male, age 53, unknown 523.5
2828 Female, age 72, unknown 495.6
2219 Male, age 76, both hemispheres 428.8
Dorsal raphe nucleus
nTPM: 531.2
2047 Male, age 72, unknown 597.0
1828 Male, age 53, unknown 565.8
2750 Male, age 76, both hemispheres 561.8
2298 Female, age 72, unknown 501.1
2016 Female, age 72, unknown 430.6
Inferior colliculus
nTPM: 456.0
1890 Male, age 53, unknown 494.3
1848 Female, age 42, unknown 463.1
2097 Female, age 72, unknown 445.7
2849 Male, age 72, unknown 421.0
Median raphe nucleus
nTPM: 601.7
2220 Male, age 76, midline 601.7
Periaquaductal grey, anterior
nTPM: 456.0
1947 Male, age 18, unknown 504.7
2502 Female, age 75, unknown 433.2
1795 Male, age 51, unknown 430.0
Periaquaductal grey, dorsal
nTPM: 406.2
1831 Male, age 72, unknown 431.1
2850 Male, age 76, both hemispheres 412.7
2464 Female, age 72, unknown 401.9
1840 Male, age 53, unknown 379.3
Periaquaductal grey, lateral
nTPM: 391.2
2272 Male, age 74, both hemispheres 417.5
2053 Male, age 18, unknown 412.5
2140 Male, age 76, both hemispheres 343.7
Pretectal area
nTPM: 482.9
2007 Male, age 72, unknown 601.9
1816 Male, age 51, unknown 578.3
1817 Female, age 42, unknown 553.6
1815 Male, age 53, unknown 532.1
1944 Female, age 72, unknown 516.3
2407 Male, age 75, both hemispheres 454.0
2667 Female, age 75, unknown 445.1
2825 Male, age 18, unknown 442.0
2224 Female, age 72, unknown 420.2
2316 Male, age 76, right hemisphere 385.7
2273 Male, age 74, both hemispheres 383.1
Red nucleus
nTPM: 594.4
1821 Female, age 72, unknown 742.8
2588 Male, age 74, left hemisphere 634.1
1865 Male, age 51, unknown 611.7
2503 Female, age 72, unknown 610.3
1954 Female, age 42, unknown 592.6
1904 Male, age 53, unknown 589.1
2584 Male, age 75, left hemisphere 588.9
2725 Female, age 75, unknown 587.3
2785 Male, age 18, unknown 563.4
2769 Male, age 72, unknown 556.5
2227 Male, age 72, unknown 542.6
2823 Male, age 76, right hemisphere 513.4
Substantia nigra
nTPM: 603.6
1916 Female, age 42, unknown 779.1
1941 Male, age 53, unknown 704.4
2583 Male, age 75, right hemisphere 652.6
1851 Male, age 51, unknown 643.3
1889 Female, age 72, unknown 601.1
2241 Male, age 72, unknown 592.3
2699 Male, age 18, unknown 563.1
2590 Female, age 75, unknown 505.4
2665 Male, age 74, both hemispheres 498.1
2409 Female, age 72, unknown 496.9
Superior colliculus
nTPM: 491.9
2668 Female, age 75, unknown 654.9
2587 Male, age 74, left hemisphere 531.4
1913 Female, age 42, unknown 512.5
1895 Male, age 76, right hemisphere 493.9
2261 Male, age 18, unknown 484.2
1839 Male, age 51, unknown 469.7
2087 Female, age 72, unknown 454.7
1796 Male, age 53, unknown 452.4
2664 Male, age 75, both hemispheres 442.6
1995 Male, age 72, unknown 422.9
Ventral tegmental area
nTPM: 550.0
2410 Female, age 72, unknown 642.1
2223 Female, age 72, unknown 638.8
1915 Female, age 42, unknown 570.3
2218 Male, age 76, both hemispheres 553.0
1942 Male, age 51, unknown 460.4
2021 Male, age 53, unknown 435.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 409.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 409.3
Samples: 139

Max nTPM: 1048.0
Min nTPM: 200.0
Std nTPM: 133.7
Median nTPM: 399.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1048.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 873.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 855.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 819.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 688.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 667.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 627.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 606.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 594.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 571.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 570.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 717.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 717.1
FF:10158-103A5 76 years, female 717.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 600.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 490.8
Samples: 4

Max nTPM: 668.9
Min nTPM: 358.4
Sample A Female 668.9
Sample B Female 358.4
Sample C Male 551.7
Sample D Male 384.1
Midbrain
nTPM: 593.3
Samples: 4

Max nTPM: 699.9
Min nTPM: 462.2
Sample A Female 589.1
Sample B Female 462.2
Sample C Male 699.9
Sample D Male 621.8
Periaqueductal gray
nTPM: 405.6
Samples: 3

Max nTPM: 441.4
Min nTPM: 376.6
Sample B Female 398.7
Sample C Male 441.4
Sample D Male 376.6
Superior colliculi
nTPM: 600.9
Samples: 4

Max nTPM: 795.1
Min nTPM: 356.1
Sample A Female 686.3
Sample B Female 356.1
Sample C Male 795.1
Sample D Male 566.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 433.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 433.4
Samples: 4

Max nTPM: 452.2
Min nTPM: 405.3
Sample A Male 405.3
Sample B Male 449.0
Sample C Female 452.2
Sample D Female 427.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.3
70805906 Antisense, RP_050725_02_E03, Mouse strain C57BL/6J (56 days, male) 17.2
68162204 Antisense, RP_041122_01_G02, Mouse strain C57BL/6J (56 days, male) 15.4

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