MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.6 nTPM
HPA Brain:24.0 nTPM
GTEx:13.6 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:1.5 nTPM
Mouse:58.4 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.9
2019 Male, age 18, unknown 24.9
2219 Male, age 76, both hemispheres 20.6
2411 Female, age 72, unknown 20.6
2586 Male, age 75, left hemisphere 20.1
1827 Male, age 72, unknown 19.9
1870 Female, age 42, unknown 19.2
1833 Male, age 53, unknown 17.8
1830 Male, age 51, unknown 16.3
2666 Male, age 74, left hemisphere 16.3
2828 Female, age 72, unknown 13.4
Dorsal raphe nucleus
nTPM: 21.1
2298 Female, age 72, unknown 26.1
1828 Male, age 53, unknown 21.0
2047 Male, age 72, unknown 20.4
2750 Male, age 76, both hemispheres 19.2
2016 Female, age 72, unknown 18.9
Inferior colliculus
nTPM: 22.2
2097 Female, age 72, unknown 28.5
1890 Male, age 53, unknown 21.6
1848 Female, age 42, unknown 20.9
2849 Male, age 72, unknown 18.0
Median raphe nucleus
nTPM: 17.8
2220 Male, age 76, midline 17.8
Periaquaductal grey, anterior
nTPM: 20.9
2502 Female, age 75, unknown 23.1
1947 Male, age 18, unknown 21.4
1795 Male, age 51, unknown 18.3
Periaquaductal grey, dorsal
nTPM: 19.5
2464 Female, age 72, unknown 20.1
1840 Male, age 53, unknown 19.9
1831 Male, age 72, unknown 19.2
2850 Male, age 76, both hemispheres 18.6
Periaquaductal grey, lateral
nTPM: 18.4
2272 Male, age 74, both hemispheres 19.6
2053 Male, age 18, unknown 17.9
2140 Male, age 76, both hemispheres 17.6
Pretectal area
nTPM: 24.0
1944 Female, age 72, unknown 33.7
1816 Male, age 51, unknown 29.6
2007 Male, age 72, unknown 28.7
1817 Female, age 42, unknown 27.8
1815 Male, age 53, unknown 26.3
2224 Female, age 72, unknown 24.5
2273 Male, age 74, both hemispheres 21.8
2667 Female, age 75, unknown 21.2
2316 Male, age 76, right hemisphere 18.2
2825 Male, age 18, unknown 17.3
2407 Male, age 75, both hemispheres 15.4
Red nucleus
nTPM: 18.3
1821 Female, age 72, unknown 22.9
2785 Male, age 18, unknown 21.6
2503 Female, age 72, unknown 20.1
1954 Female, age 42, unknown 19.6
2725 Female, age 75, unknown 19.4
1865 Male, age 51, unknown 18.4
1904 Male, age 53, unknown 18.2
2823 Male, age 76, right hemisphere 16.7
2227 Male, age 72, unknown 16.5
2584 Male, age 75, left hemisphere 15.8
2769 Male, age 72, unknown 15.4
2588 Male, age 74, left hemisphere 14.7
Substantia nigra
nTPM: 21.1
2241 Male, age 72, unknown 28.8
1889 Female, age 72, unknown 28.6
1941 Male, age 53, unknown 23.7
1916 Female, age 42, unknown 21.8
1851 Male, age 51, unknown 20.0
2665 Male, age 74, both hemispheres 19.5
2583 Male, age 75, right hemisphere 19.4
2590 Female, age 75, unknown 18.0
2409 Female, age 72, unknown 16.3
2699 Male, age 18, unknown 14.8
Superior colliculus
nTPM: 21.6
2087 Female, age 72, unknown 28.8
2261 Male, age 18, unknown 25.2
2668 Female, age 75, unknown 23.0
1895 Male, age 76, right hemisphere 22.1
1796 Male, age 53, unknown 21.1
1839 Male, age 51, unknown 20.0
1913 Female, age 42, unknown 19.8
2587 Male, age 74, left hemisphere 19.4
1995 Male, age 72, unknown 19.1
2664 Male, age 75, both hemispheres 17.7
Ventral tegmental area
nTPM: 19.6
2410 Female, age 72, unknown 22.4
1942 Male, age 51, unknown 21.8
2218 Male, age 76, both hemispheres 21.2
1915 Female, age 42, unknown 20.1
2223 Female, age 72, unknown 16.1
2021 Male, age 53, unknown 15.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.6
Samples: 139

Max nTPM: 24.2
Min nTPM: 5.4
Std nTPM: 3.1
Median nTPM: 13.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 24.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 23.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 20.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 20.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 19.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 18.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 17.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.9
Sample C Male 1.1
Sample D Male 1.3
Midbrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.1
Sample C Male 0.9
Sample D Male 1.4
Periaqueductal gray
nTPM: 1.5
Samples: 3

Max nTPM: 1.8
Min nTPM: 1.3
Sample B Female 1.3
Sample C Male 1.8
Sample D Male 1.4
Superior colliculi
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.8
Sample D Male 0.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.4
Samples: 4

Max nTPM: 59.5
Min nTPM: 57.5
Sample A Male 57.5
Sample B Male 57.9
Sample C Female 58.8
Sample D Female 59.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70565123 Antisense, RP_050623_04_C04, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org