MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:215.6 nTPM
HPA Brain:110.1 nTPM
GTEx:215.6 nTPM
FANTOM5:409.2 Scaled Tags Per Million
Mouse:172.5 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.6
2019 Male, age 18, unknown 110.6
1870 Female, age 42, unknown 109.2
2411 Female, age 72, unknown 99.8
1833 Male, age 53, unknown 89.4
1830 Male, age 51, unknown 82.7
1827 Male, age 72, unknown 81.7
2219 Male, age 76, both hemispheres 79.9
2828 Female, age 72, unknown 73.5
2666 Male, age 74, left hemisphere 58.2
2586 Male, age 75, left hemisphere 51.3
Dorsal raphe nucleus
nTPM: 101.4
2298 Female, age 72, unknown 129.4
1828 Male, age 53, unknown 103.2
2047 Male, age 72, unknown 99.9
2016 Female, age 72, unknown 91.3
2750 Male, age 76, both hemispheres 83.2
Inferior colliculus
nTPM: 90.2
2097 Female, age 72, unknown 105.6
1890 Male, age 53, unknown 91.3
1848 Female, age 42, unknown 84.3
2849 Male, age 72, unknown 79.7
Median raphe nucleus
nTPM: 110.1
2220 Male, age 76, midline 110.1
Periaquaductal grey, anterior
nTPM: 87.5
2502 Female, age 75, unknown 95.3
1947 Male, age 18, unknown 91.3
1795 Male, age 51, unknown 75.7
Periaquaductal grey, dorsal
nTPM: 88.2
2850 Male, age 76, both hemispheres 106.7
1831 Male, age 72, unknown 82.4
2464 Female, age 72, unknown 82.2
1840 Male, age 53, unknown 81.6
Periaquaductal grey, lateral
nTPM: 90.0
2140 Male, age 76, both hemispheres 100.0
2272 Male, age 74, both hemispheres 87.0
2053 Male, age 18, unknown 82.9
Pretectal area
nTPM: 99.4
2273 Male, age 74, both hemispheres 109.9
2007 Male, age 72, unknown 108.6
2224 Female, age 72, unknown 106.9
1817 Female, age 42, unknown 106.2
1816 Male, age 51, unknown 105.9
1944 Female, age 72, unknown 99.5
2667 Female, age 75, unknown 97.4
1815 Male, age 53, unknown 96.8
2407 Male, age 75, both hemispheres 93.6
2825 Male, age 18, unknown 86.2
2316 Male, age 76, right hemisphere 82.1
Red nucleus
nTPM: 92.7
1821 Female, age 72, unknown 123.3
2725 Female, age 75, unknown 113.1
1954 Female, age 42, unknown 102.6
1865 Male, age 51, unknown 100.7
2503 Female, age 72, unknown 98.4
2785 Male, age 18, unknown 94.8
1904 Male, age 53, unknown 94.4
2823 Male, age 76, right hemisphere 93.7
2227 Male, age 72, unknown 86.5
2769 Male, age 72, unknown 83.1
2584 Male, age 75, left hemisphere 70.6
2588 Male, age 74, left hemisphere 51.3
Substantia nigra
nTPM: 94.7
2241 Male, age 72, unknown 121.2
1889 Female, age 72, unknown 120.8
1916 Female, age 42, unknown 110.4
1941 Male, age 53, unknown 106.0
1851 Male, age 51, unknown 104.9
2699 Male, age 18, unknown 83.7
2409 Female, age 72, unknown 82.6
2590 Female, age 75, unknown 80.0
2665 Male, age 74, both hemispheres 71.7
2583 Male, age 75, right hemisphere 66.2
Superior colliculus
nTPM: 86.1
2587 Male, age 74, left hemisphere 114.5
1895 Male, age 76, right hemisphere 97.9
2087 Female, age 72, unknown 93.0
1913 Female, age 42, unknown 92.6
1796 Male, age 53, unknown 84.6
1995 Male, age 72, unknown 81.5
2261 Male, age 18, unknown 78.7
1839 Male, age 51, unknown 76.1
2668 Female, age 75, unknown 73.5
2664 Male, age 75, both hemispheres 68.3
Ventral tegmental area
nTPM: 89.3
2410 Female, age 72, unknown 107.1
1915 Female, age 42, unknown 95.6
2223 Female, age 72, unknown 92.8
2218 Male, age 76, both hemispheres 85.1
1942 Male, age 51, unknown 83.5
2021 Male, age 53, unknown 71.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 215.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 215.6
Samples: 139

Max nTPM: 925.4
Min nTPM: 100.4
Std nTPM: 124.2
Median nTPM: 177.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 925.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 830.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 658.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 652.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 628.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 584.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 502.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 383.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 378.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 359.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 352.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 409.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 409.2
FF:10158-103A5 76 years, female 409.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 172.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 172.5
Samples: 4

Max nTPM: 182.4
Min nTPM: 160.3
Sample A Male 180.3
Sample B Male 167.0
Sample C Female 160.3
Sample D Female 182.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
68499485 Antisense, RP_050118_01_F05, Mouse strain C57BL/6J (56 days, male) 9.3

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