MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.2 nTPM
HPA Brain:185.0 nTPM
GTEx:60.2 nTPM
FANTOM5:134.1 Scaled Tags Per Million
Pig:82.3 nTPM
Mouse:70.7 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 185.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 166.2
2019 Male, age 18, unknown 200.2
2586 Male, age 75, left hemisphere 188.9
2666 Male, age 74, left hemisphere 181.3
1827 Male, age 72, unknown 167.6
2828 Female, age 72, unknown 165.6
1833 Male, age 53, unknown 159.2
1870 Female, age 42, unknown 157.6
1830 Male, age 51, unknown 152.6
2411 Female, age 72, unknown 152.4
2219 Male, age 76, both hemispheres 136.2
Dorsal raphe nucleus
nTPM: 168.8
2047 Male, age 72, unknown 176.1
2298 Female, age 72, unknown 170.8
1828 Male, age 53, unknown 168.0
2016 Female, age 72, unknown 166.4
2750 Male, age 76, both hemispheres 162.5
Inferior colliculus
nTPM: 149.0
1890 Male, age 53, unknown 159.8
1848 Female, age 42, unknown 148.0
2849 Male, age 72, unknown 145.0
2097 Female, age 72, unknown 143.0
Median raphe nucleus
nTPM: 160.0
2220 Male, age 76, midline 160.0
Periaquaductal grey, anterior
nTPM: 167.0
1795 Male, age 51, unknown 170.4
1947 Male, age 18, unknown 167.3
2502 Female, age 75, unknown 163.5
Periaquaductal grey, dorsal
nTPM: 158.0
2850 Male, age 76, both hemispheres 173.9
1840 Male, age 53, unknown 162.1
1831 Male, age 72, unknown 148.7
2464 Female, age 72, unknown 147.2
Periaquaductal grey, lateral
nTPM: 167.8
2272 Male, age 74, both hemispheres 179.2
2140 Male, age 76, both hemispheres 175.9
2053 Male, age 18, unknown 148.4
Pretectal area
nTPM: 169.6
1816 Male, age 51, unknown 195.9
2007 Male, age 72, unknown 195.4
1817 Female, age 42, unknown 188.4
1944 Female, age 72, unknown 181.0
1815 Male, age 53, unknown 176.0
2273 Male, age 74, both hemispheres 165.6
2667 Female, age 75, unknown 161.9
2407 Male, age 75, both hemispheres 160.0
2224 Female, age 72, unknown 152.5
2316 Male, age 76, right hemisphere 147.0
2825 Male, age 18, unknown 142.1
Red nucleus
nTPM: 167.6
2588 Male, age 74, left hemisphere 183.8
2785 Male, age 18, unknown 183.4
2584 Male, age 75, left hemisphere 179.9
1904 Male, age 53, unknown 171.2
2725 Female, age 75, unknown 168.7
1865 Male, age 51, unknown 167.8
1821 Female, age 72, unknown 164.3
2503 Female, age 72, unknown 163.4
2823 Male, age 76, right hemisphere 160.4
1954 Female, age 42, unknown 158.8
2227 Male, age 72, unknown 155.0
2769 Male, age 72, unknown 154.8
Substantia nigra
nTPM: 185.0
1916 Female, age 42, unknown 209.2
1851 Male, age 51, unknown 198.5
2241 Male, age 72, unknown 190.1
2409 Female, age 72, unknown 189.6
1941 Male, age 53, unknown 185.0
2590 Female, age 75, unknown 182.7
1889 Female, age 72, unknown 178.8
2699 Male, age 18, unknown 178.1
2665 Male, age 74, both hemispheres 173.0
2583 Male, age 75, right hemisphere 164.9
Superior colliculus
nTPM: 162.8
2668 Female, age 75, unknown 173.3
2261 Male, age 18, unknown 169.4
2587 Male, age 74, left hemisphere 169.4
2664 Male, age 75, both hemispheres 168.8
2087 Female, age 72, unknown 166.1
1995 Male, age 72, unknown 163.4
1913 Female, age 42, unknown 161.5
1796 Male, age 53, unknown 161.2
1895 Male, age 76, right hemisphere 149.4
1839 Male, age 51, unknown 145.4
Ventral tegmental area
nTPM: 164.1
2410 Female, age 72, unknown 187.4
1915 Female, age 42, unknown 174.4
2218 Male, age 76, both hemispheres 166.8
2223 Female, age 72, unknown 155.4
1942 Male, age 51, unknown 154.9
2021 Male, age 53, unknown 145.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.2
Samples: 139

Max nTPM: 85.5
Min nTPM: 38.4
Std nTPM: 8.4
Median nTPM: 60.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 85.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 81.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 80.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 78.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 78.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 74.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 74.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 74.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 73.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 73.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 134.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 134.1
FF:10158-103A5 76 years, female 134.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.1
Samples: 4

Max nTPM: 86.1
Min nTPM: 65.8
Sample A Female 83.1
Sample B Female 69.5
Sample C Male 86.1
Sample D Male 65.8
Midbrain
nTPM: 75.2
Samples: 4

Max nTPM: 91.8
Min nTPM: 58.5
Sample A Female 82.0
Sample B Female 58.5
Sample C Male 91.8
Sample D Male 68.5
Periaqueductal gray
nTPM: 57.5
Samples: 3

Max nTPM: 64.7
Min nTPM: 53.1
Sample B Female 54.7
Sample C Male 64.7
Sample D Male 53.1
Superior colliculi
nTPM: 82.3
Samples: 4

Max nTPM: 88.3
Min nTPM: 75.3
Sample A Female 78.5
Sample B Female 88.3
Sample C Male 87.1
Sample D Male 75.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.7
Samples: 4

Max nTPM: 76.9
Min nTPM: 61.9
Sample A Male 61.9
Sample B Male 72.1
Sample C Female 76.9
Sample D Female 71.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
74819232 Antisense, RP_060315_02_B08, Mouse strain C57BL/6J (56 days, male) 12.2
77932809 Antisense, RP_070320_02_C02, Mouse strain C57BL/6J (56 days, male) 8.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org