HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:323.7 nTPM
HPA Brain:153.2 nTPM
GTEx:323.7 nTPM
FANTOM5:125.1 Scaled Tags Per Million
Pig:247.6 nTPM
Mouse:273.7 nTPM
Allen mouse:16.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004190Antibody CAB005870
Glial cells HighLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 153.2
Sample id Sample description nTPM
Hippocampus
nTPM: 144.6
1898 Male, age 80, left hemisphere 175.2
2529 Female, age 94, left hemisphere 153.5
2148 Female, age 91, left hemisphere 138.2
2621 Female, age 67, right hemisphere 134.5
1855 Male, age 76, left hemisphere 134.4
1911 Female, age 85, right hemisphere 131.6
Dentate gyrus
nTPM: 134.9
1927 Female, age 91, both hemispheres 158.2
2010 Male, age 76, both hemispheres 147.4
2528 Male, age 74, both hemispheres 143.7
2246 Female, age 85, both hemispheres 140.4
2530 Female, age 94, left hemisphere 120.4
2531 Female, age 67, both hemispheres 99.3
Entorhinal gyrus
nTPM: 119.4
1938 Female, age 85, left hemisphere 144.4
2764 Male, age 80, right hemisphere 135.6
2117 Female, age 91, right hemisphere 131.7
1787 Male, age 76, left hemisphere 110.1
2686 Male, age 75, right hemisphere 105.1
2613 Female, age 94, left hemisphere 89.8
Hippocampus, CA1
nTPM: 153.2
2749 Male, age 80, left hemisphere 195.8
1873 Female, age 85, both hemispheres 162.0
2527 Male, age 74, both hemispheres 154.3
2045 Male, age 76, both hemispheres 127.7
2082 Female, age 91, right hemisphere 126.4
Hippocampus, CA2
nTPM: 148.2
2249 Male, age 74, both hemispheres 172.4
1892 Male, age 76, both hemispheres 171.2
1963 Male, age 80, left hemisphere 166.9
2113 Female, age 91, right hemisphere 137.1
1940 Female, age 85, left hemisphere 128.8
2437 Female, age 94, left hemisphere 112.4
Hippocampus, CA3
nTPM: 141.1
2436 Male, age 74, both hemispheres 206.6
2137 Male, age 80, left hemisphere 160.7
1867 Male, age 76, both hemispheres 152.3
1891 Female, age 85, both hemispheres 133.7
2620 Female, age 94, left hemisphere 99.5
2861 Female, age 67, both hemispheres 94.0
Parahippocampal cortex
nTPM: 132.1
1933 Female, age 85, both hemispheres 152.4
1850 Male, age 80, both hemispheres 151.2
2245 Female, age 91, both hemispheres 151.1
2250 Female, age 67, right hemisphere 148.2
1990 Female, age 91, right hemisphere 134.1
2532 Female, age 72, left hemisphere 133.5
2018 Male, age 76, both hemispheres 132.7
2692 Male, age 74, both hemispheres 110.2
2693 Female, age 94, both hemispheres 108.9
2622 Female, age 67, right hemisphere 99.2
Perirhinal gyrus
nTPM: 149.7
1847 Female, age 91, left hemisphere 185.5
1841 Female, age 85, right hemisphere 164.7
1794 Male, age 80, right hemisphere 148.2
2521 Female, age 94, right hemisphere 127.1
2848 Male, age 76, right hemisphere 122.9
Subiculum
nTPM: 131.0
1901 Male, age 80, both hemispheres 144.9
1977 Female, age 85, both hemispheres 139.6
2438 Female, age 94, left hemisphere 136.6
2729 Female, age 91, right hemisphere 128.0
2042 Male, age 76, both hemispheres 118.4
2619 Male, age 74, both hemispheres 118.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 323.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 323.7
Samples: 197

Max nTPM: 788.3
Min nTPM: 148.9
Std nTPM: 84.3
Median nTPM: 313.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 788.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 608.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 574.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 571.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 558.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 556.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 553.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 530.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 505.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 503.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 447.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 125.1
FF:10169-103B7 60 years, female 176.5
FF:10153-102I9 76 years, female 73.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 247.6
Pig sample Sample description nTPM
Subiculum
nTPM: 188.2
Samples: 4

Max nTPM: 244.8
Min nTPM: 165.3
Sample A Female 244.8
Sample B Female 170.3
Sample C Male 165.3
Sample D Male 172.5
Dorsal hippocampus
nTPM: 247.6
Samples: 4

Max nTPM: 340.9
Min nTPM: 190.8
Sample A Female 340.9
Sample B Female 217.9
Sample C Male 240.6
Sample D Male 190.8
Entorhinal cortex
nTPM: 187.5
Samples: 4

Max nTPM: 220.0
Min nTPM: 143.9
Sample A Female 220.0
Sample B Female 213.6
Sample C Male 172.4
Sample D Male 143.9
Ventral hippocampus
nTPM: 213.2
Samples: 4

Max nTPM: 238.2
Min nTPM: 150.0
Sample A Female 232.0
Sample B Female 150.0
Sample C Male 238.2
Sample D Male 232.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 273.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 228.0
Samples: 4

Max nTPM: 247.1
Min nTPM: 211.4
Sample A Male 211.4
Sample B Male 225.4
Sample C Female 247.1
Sample D Female 227.9
Hippocampal formation
nTPM: 273.7
Samples: 4

Max nTPM: 283.3
Min nTPM: 259.1
Sample A Male 280.7
Sample B Male 259.1
Sample C Female 283.3
Sample D Female 271.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.2
513239 Antisense, RP_040810_01_D07, Mouse strain C57BL/6J (56 days, male) 17.9
112194293 Antisense, RP_110421_01_E04, Mouse strain C57BL/6J (56 days, male) 14.5

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