MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:369.3 nTPM
HPA Brain:157.1 nTPM
GTEx:369.3 nTPM
FANTOM5:84.7 Scaled Tags Per Million
Pig:315.8 nTPM
Mouse:233.8 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 157.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.9
2019 Male, age 18, unknown 156.5
2411 Female, age 72, unknown 153.9
1827 Male, age 72, unknown 142.5
1870 Female, age 42, unknown 138.1
2828 Female, age 72, unknown 136.6
2219 Male, age 76, both hemispheres 136.1
1830 Male, age 51, unknown 119.9
1833 Male, age 53, unknown 118.7
2666 Male, age 74, left hemisphere 112.2
2586 Male, age 75, left hemisphere 94.1
Dorsal raphe nucleus
nTPM: 149.9
2298 Female, age 72, unknown 174.3
2750 Male, age 76, both hemispheres 147.0
2047 Male, age 72, unknown 145.5
1828 Male, age 53, unknown 143.6
2016 Female, age 72, unknown 139.3
Inferior colliculus
nTPM: 138.7
2097 Female, age 72, unknown 150.0
1890 Male, age 53, unknown 141.6
1848 Female, age 42, unknown 135.4
2849 Male, age 72, unknown 128.0
Median raphe nucleus
nTPM: 157.1
2220 Male, age 76, midline 157.1
Periaquaductal grey, anterior
nTPM: 130.6
1947 Male, age 18, unknown 136.3
1795 Male, age 51, unknown 132.4
2502 Female, age 75, unknown 123.2
Periaquaductal grey, dorsal
nTPM: 135.8
1840 Male, age 53, unknown 150.4
2850 Male, age 76, both hemispheres 138.4
2464 Female, age 72, unknown 127.8
1831 Male, age 72, unknown 126.7
Periaquaductal grey, lateral
nTPM: 141.8
2272 Male, age 74, both hemispheres 175.6
2140 Male, age 76, both hemispheres 135.2
2053 Male, age 18, unknown 114.8
Pretectal area
nTPM: 152.1
2667 Female, age 75, unknown 175.3
2273 Male, age 74, both hemispheres 173.3
1944 Female, age 72, unknown 172.9
1817 Female, age 42, unknown 169.7
2007 Male, age 72, unknown 166.4
1816 Male, age 51, unknown 157.3
1815 Male, age 53, unknown 148.2
2224 Female, age 72, unknown 146.2
2407 Male, age 75, both hemispheres 133.2
2825 Male, age 18, unknown 122.8
2316 Male, age 76, right hemisphere 107.9
Red nucleus
nTPM: 132.8
1821 Female, age 72, unknown 157.3
2725 Female, age 75, unknown 147.8
1904 Male, age 53, unknown 143.1
1954 Female, age 42, unknown 141.5
1865 Male, age 51, unknown 139.8
2785 Male, age 18, unknown 139.8
2503 Female, age 72, unknown 138.4
2227 Male, age 72, unknown 129.9
2769 Male, age 72, unknown 126.1
2823 Male, age 76, right hemisphere 125.5
2588 Male, age 74, left hemisphere 106.7
2584 Male, age 75, left hemisphere 97.6
Substantia nigra
nTPM: 155.8
1916 Female, age 42, unknown 201.8
1851 Male, age 51, unknown 175.1
2409 Female, age 72, unknown 169.0
2241 Male, age 72, unknown 167.0
1889 Female, age 72, unknown 165.0
1941 Male, age 53, unknown 160.7
2699 Male, age 18, unknown 157.0
2665 Male, age 74, both hemispheres 126.4
2590 Female, age 75, unknown 126.2
2583 Male, age 75, right hemisphere 109.6
Superior colliculus
nTPM: 128.4
2587 Male, age 74, left hemisphere 150.2
2087 Female, age 72, unknown 140.0
2261 Male, age 18, unknown 139.0
1796 Male, age 53, unknown 134.0
1895 Male, age 76, right hemisphere 130.7
2668 Female, age 75, unknown 125.9
1995 Male, age 72, unknown 121.6
1913 Female, age 42, unknown 118.7
1839 Male, age 51, unknown 114.3
2664 Male, age 75, both hemispheres 109.4
Ventral tegmental area
nTPM: 155.8
1915 Female, age 42, unknown 177.1
2410 Female, age 72, unknown 175.2
2218 Male, age 76, both hemispheres 163.6
1942 Male, age 51, unknown 145.6
2223 Female, age 72, unknown 141.2
2021 Male, age 53, unknown 131.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 369.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 369.3
Samples: 139

Max nTPM: 593.3
Min nTPM: 230.3
Std nTPM: 68.5
Median nTPM: 354.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 593.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 576.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 573.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 542.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 527.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 525.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 512.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 501.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 494.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 490.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 490.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.7
FF:10158-103A5 76 years, female 84.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 315.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 291.6
Samples: 4

Max nTPM: 380.1
Min nTPM: 221.9
Sample A Female 380.1
Sample B Female 221.9
Sample C Male 276.2
Sample D Male 288.1
Midbrain
nTPM: 315.8
Samples: 4

Max nTPM: 563.8
Min nTPM: 227.5
Sample A Female 563.8
Sample B Female 243.9
Sample C Male 228.1
Sample D Male 227.5
Periaqueductal gray
nTPM: 222.4
Samples: 3

Max nTPM: 239.5
Min nTPM: 213.4
Sample B Female 214.4
Sample C Male 239.5
Sample D Male 213.4
Superior colliculi
nTPM: 281.9
Samples: 4

Max nTPM: 357.6
Min nTPM: 238.7
Sample A Female 357.6
Sample B Female 238.7
Sample C Male 272.6
Sample D Male 258.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 233.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 233.8
Samples: 4

Max nTPM: 248.3
Min nTPM: 218.2
Sample A Male 241.3
Sample B Male 227.2
Sample C Female 218.2
Sample D Female 248.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
112194293 Antisense, RP_110421_01_E04, Mouse strain C57BL/6J (56 days, male) 10.5
513239 Antisense, RP_040810_01_D07, Mouse strain C57BL/6J (56 days, male) 10.4

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