MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:131.1 nTPM
HPA Brain:318.7 nTPM
GTEx:131.1 nTPM
FANTOM5:408.6 Scaled Tags Per Million
Pig:350.3 nTPM
Mouse:26.8 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 318.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 252.1
1870 Female, age 42, unknown 319.3
1830 Male, age 51, unknown 303.7
2411 Female, age 72, unknown 288.6
2666 Male, age 74, left hemisphere 281.5
2828 Female, age 72, unknown 278.1
2019 Male, age 18, unknown 277.9
1833 Male, age 53, unknown 260.7
2586 Male, age 75, left hemisphere 205.2
1827 Male, age 72, unknown 175.6
2219 Male, age 76, both hemispheres 130.7
Dorsal raphe nucleus
nTPM: 231.4
2750 Male, age 76, both hemispheres 252.7
1828 Male, age 53, unknown 247.1
2016 Female, age 72, unknown 242.5
2047 Male, age 72, unknown 209.9
2298 Female, age 72, unknown 204.9
Inferior colliculus
nTPM: 212.3
1890 Male, age 53, unknown 247.2
2097 Female, age 72, unknown 238.1
1848 Female, age 42, unknown 190.5
2849 Male, age 72, unknown 173.4
Median raphe nucleus
nTPM: 182.0
2220 Male, age 76, midline 182.0
Periaquaductal grey, anterior
nTPM: 147.7
2502 Female, age 75, unknown 153.2
1947 Male, age 18, unknown 147.1
1795 Male, age 51, unknown 142.9
Periaquaductal grey, dorsal
nTPM: 183.8
2464 Female, age 72, unknown 219.2
1831 Male, age 72, unknown 199.5
2850 Male, age 76, both hemispheres 181.9
1840 Male, age 53, unknown 134.8
Periaquaductal grey, lateral
nTPM: 202.7
2053 Male, age 18, unknown 229.9
2140 Male, age 76, both hemispheres 192.9
2272 Male, age 74, both hemispheres 185.2
Pretectal area
nTPM: 164.1
2316 Male, age 76, right hemisphere 207.8
1815 Male, age 53, unknown 196.7
2825 Male, age 18, unknown 182.3
2273 Male, age 74, both hemispheres 174.3
2667 Female, age 75, unknown 169.1
1817 Female, age 42, unknown 168.3
2407 Male, age 75, both hemispheres 166.6
1944 Female, age 72, unknown 156.6
2007 Male, age 72, unknown 143.7
2224 Female, age 72, unknown 139.1
1816 Male, age 51, unknown 100.9
Red nucleus
nTPM: 318.7
1865 Male, age 51, unknown 400.5
2769 Male, age 72, unknown 366.6
2227 Male, age 72, unknown 363.7
2503 Female, age 72, unknown 341.7
1904 Male, age 53, unknown 333.7
1821 Female, age 72, unknown 333.6
1954 Female, age 42, unknown 331.6
2823 Male, age 76, right hemisphere 314.8
2785 Male, age 18, unknown 290.8
2725 Female, age 75, unknown 281.1
2588 Male, age 74, left hemisphere 240.5
2584 Male, age 75, left hemisphere 226.0
Substantia nigra
nTPM: 243.0
2583 Male, age 75, right hemisphere 296.1
2699 Male, age 18, unknown 275.2
1851 Male, age 51, unknown 266.2
2590 Female, age 75, unknown 248.9
2409 Female, age 72, unknown 247.0
1941 Male, age 53, unknown 239.5
2241 Male, age 72, unknown 224.1
1916 Female, age 42, unknown 211.6
2665 Male, age 74, both hemispheres 211.0
1889 Female, age 72, unknown 210.1
Superior colliculus
nTPM: 207.0
1913 Female, age 42, unknown 343.3
1995 Male, age 72, unknown 298.2
2587 Male, age 74, left hemisphere 244.8
2668 Female, age 75, unknown 198.0
1839 Male, age 51, unknown 197.1
1796 Male, age 53, unknown 178.5
2087 Female, age 72, unknown 166.9
2664 Male, age 75, both hemispheres 161.0
1895 Male, age 76, right hemisphere 153.5
2261 Male, age 18, unknown 128.8
Ventral tegmental area
nTPM: 270.5
2223 Female, age 72, unknown 395.3
2410 Female, age 72, unknown 297.1
1942 Male, age 51, unknown 251.0
1915 Female, age 42, unknown 236.4
2021 Male, age 53, unknown 227.8
2218 Male, age 76, both hemispheres 215.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 131.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.1
Samples: 139

Max nTPM: 339.8
Min nTPM: 33.1
Std nTPM: 49.2
Median nTPM: 129.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 339.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 258.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 235.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 235.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 228.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 228.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 225.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 219.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 215.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 210.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 203.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 408.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 408.6
FF:10158-103A5 76 years, female 408.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 350.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 331.9
Samples: 4

Max nTPM: 434.3
Min nTPM: 209.1
Sample A Female 356.9
Sample B Female 209.1
Sample C Male 327.1
Sample D Male 434.3
Midbrain
nTPM: 350.3
Samples: 4

Max nTPM: 701.8
Min nTPM: 182.1
Sample A Female 701.8
Sample B Female 278.5
Sample C Male 238.9
Sample D Male 182.1
Periaqueductal gray
nTPM: 247.9
Samples: 3

Max nTPM: 261.1
Min nTPM: 238.9
Sample B Female 261.1
Sample C Male 238.9
Sample D Male 243.6
Superior colliculi
nTPM: 254.4
Samples: 4

Max nTPM: 324.9
Min nTPM: 119.3
Sample A Female 273.5
Sample B Female 119.3
Sample C Male 299.9
Sample D Male 324.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 31.0
Min nTPM: 24.1
Sample A Male 25.6
Sample B Male 24.1
Sample C Female 26.3
Sample D Female 31.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69013438 Antisense, RP_050309_02_D07, Mouse strain C57BL/6J (56 days, male) 1.7

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