MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:177.1 nTPM
HPA Brain:131.2 nTPM
GTEx:177.1 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:110.9 nTPM
Mouse:360.5 nTPM
Allen mouse:23.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 131.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.3
2411 Female, age 72, unknown 132.7
2019 Male, age 18, unknown 130.0
1827 Male, age 72, unknown 124.4
2666 Male, age 74, left hemisphere 123.5
2586 Male, age 75, left hemisphere 101.5
2828 Female, age 72, unknown 98.9
1870 Female, age 42, unknown 94.8
2219 Male, age 76, both hemispheres 92.8
1833 Male, age 53, unknown 85.8
1830 Male, age 51, unknown 78.6
Dorsal raphe nucleus
nTPM: 108.1
2298 Female, age 72, unknown 162.7
2750 Male, age 76, both hemispheres 109.6
2047 Male, age 72, unknown 98.6
1828 Male, age 53, unknown 97.6
2016 Female, age 72, unknown 72.3
Inferior colliculus
nTPM: 86.8
2097 Female, age 72, unknown 124.6
1890 Male, age 53, unknown 89.0
1848 Female, age 42, unknown 75.7
2849 Male, age 72, unknown 58.1
Median raphe nucleus
nTPM: 117.2
2220 Male, age 76, midline 117.2
Periaquaductal grey, anterior
nTPM: 115.5
1795 Male, age 51, unknown 134.3
1947 Male, age 18, unknown 112.0
2502 Female, age 75, unknown 100.1
Periaquaductal grey, dorsal
nTPM: 82.1
1831 Male, age 72, unknown 89.4
2464 Female, age 72, unknown 84.7
2850 Male, age 76, both hemispheres 77.7
1840 Male, age 53, unknown 76.5
Periaquaductal grey, lateral
nTPM: 84.9
2053 Male, age 18, unknown 87.8
2272 Male, age 74, both hemispheres 87.0
2140 Male, age 76, both hemispheres 79.8
Pretectal area
nTPM: 128.0
1816 Male, age 51, unknown 182.5
2007 Male, age 72, unknown 174.5
1817 Female, age 42, unknown 165.0
1944 Female, age 72, unknown 158.7
1815 Male, age 53, unknown 148.6
2667 Female, age 75, unknown 123.0
2224 Female, age 72, unknown 108.3
2273 Male, age 74, both hemispheres 96.2
2316 Male, age 76, right hemisphere 86.4
2825 Male, age 18, unknown 83.1
2407 Male, age 75, both hemispheres 81.4
Red nucleus
nTPM: 97.9
2785 Male, age 18, unknown 130.1
1821 Female, age 72, unknown 112.5
1904 Male, age 53, unknown 106.4
2503 Female, age 72, unknown 99.1
1865 Male, age 51, unknown 95.2
2725 Female, age 75, unknown 94.9
2584 Male, age 75, left hemisphere 92.3
2769 Male, age 72, unknown 91.1
1954 Female, age 42, unknown 90.0
2227 Male, age 72, unknown 89.2
2588 Male, age 74, left hemisphere 88.1
2823 Male, age 76, right hemisphere 85.6
Substantia nigra
nTPM: 131.2
1916 Female, age 42, unknown 194.4
1851 Male, age 51, unknown 166.3
1889 Female, age 72, unknown 148.3
2241 Male, age 72, unknown 139.9
1941 Male, age 53, unknown 138.7
2409 Female, age 72, unknown 138.0
2665 Male, age 74, both hemispheres 113.7
2583 Male, age 75, right hemisphere 112.4
2699 Male, age 18, unknown 85.7
2590 Female, age 75, unknown 74.7
Superior colliculus
nTPM: 116.7
2668 Female, age 75, unknown 217.0
2087 Female, age 72, unknown 148.5
2261 Male, age 18, unknown 142.1
1796 Male, age 53, unknown 129.2
1913 Female, age 42, unknown 106.3
2587 Male, age 74, left hemisphere 100.3
1995 Male, age 72, unknown 95.1
1895 Male, age 76, right hemisphere 91.7
1839 Male, age 51, unknown 75.1
2664 Male, age 75, both hemispheres 61.7
Ventral tegmental area
nTPM: 124.0
2410 Female, age 72, unknown 180.0
1915 Female, age 42, unknown 138.8
2218 Male, age 76, both hemispheres 137.1
1942 Male, age 51, unknown 103.9
2021 Male, age 53, unknown 92.3
2223 Female, age 72, unknown 92.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 177.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 177.1
Samples: 139

Max nTPM: 372.5
Min nTPM: 78.1
Std nTPM: 60.7
Median nTPM: 163.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 372.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 349.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 336.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 312.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 299.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 295.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 285.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 283.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 281.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 274.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 274.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 110.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 100.3
Samples: 4

Max nTPM: 140.9
Min nTPM: 69.9
Sample A Female 140.9
Sample B Female 80.1
Sample C Male 110.1
Sample D Male 69.9
Midbrain
nTPM: 101.7
Samples: 4

Max nTPM: 118.0
Min nTPM: 84.8
Sample A Female 115.5
Sample B Female 84.8
Sample C Male 118.0
Sample D Male 88.3
Periaqueductal gray
nTPM: 72.3
Samples: 3

Max nTPM: 87.2
Min nTPM: 63.1
Sample B Female 66.6
Sample C Male 87.2
Sample D Male 63.1
Superior colliculi
nTPM: 110.9
Samples: 4

Max nTPM: 125.2
Min nTPM: 92.1
Sample A Female 125.2
Sample B Female 101.2
Sample C Male 125.2
Sample D Male 92.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 360.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 360.5
Samples: 4

Max nTPM: 395.0
Min nTPM: 316.2
Sample A Male 391.9
Sample B Male 339.0
Sample C Female 316.2
Sample D Female 395.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.7
71608227 Antisense, RP_050927_01_C11, Mouse strain C57BL/6J (56 days, male) 25.3
293682 Antisense, RP_040604_02_H09, Mouse strain C57BL/6J (56 days, male) 22.1

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