HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:19.6 nTPM
HPA Brain:66.1 nTPM
GTEx:19.6 nTPM
FANTOM5:184.5 Scaled Tags Per Million
Pig:79.1 nTPM
Mouse:30.7 nTPM
Allen mouse:19.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA025766Antibody HPA028659
Glial cells Not detectedLow
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 66.1
Sample id Sample description nTPM
Hippocampus
nTPM: 64.4
2621 Female, age 67, right hemisphere 70.7
1855 Male, age 76, left hemisphere 69.5
2529 Female, age 94, left hemisphere 65.5
2148 Female, age 91, left hemisphere 63.7
1898 Male, age 80, left hemisphere 59.1
1911 Female, age 85, right hemisphere 58.1
Dentate gyrus
nTPM: 64.8
2531 Female, age 67, both hemispheres 75.9
2246 Female, age 85, both hemispheres 72.7
2530 Female, age 94, left hemisphere 66.4
2010 Male, age 76, both hemispheres 64.7
2528 Male, age 74, both hemispheres 56.1
1927 Female, age 91, both hemispheres 53.0
Entorhinal gyrus
nTPM: 65.1
2686 Male, age 75, right hemisphere 72.4
2613 Female, age 94, left hemisphere 69.4
1787 Male, age 76, left hemisphere 64.8
1938 Female, age 85, left hemisphere 62.9
2764 Male, age 80, right hemisphere 60.6
2117 Female, age 91, right hemisphere 60.4
Hippocampus, CA1
nTPM: 63.5
2045 Male, age 76, both hemispheres 75.0
1873 Female, age 85, both hemispheres 62.3
2749 Male, age 80, left hemisphere 62.1
2527 Male, age 74, both hemispheres 61.3
2082 Female, age 91, right hemisphere 57.0
Hippocampus, CA2
nTPM: 58.6
1940 Female, age 85, left hemisphere 63.0
1892 Male, age 76, both hemispheres 62.4
2437 Female, age 94, left hemisphere 62.3
2113 Female, age 91, right hemisphere 58.0
1963 Male, age 80, left hemisphere 55.2
2249 Male, age 74, both hemispheres 50.9
Hippocampus, CA3
nTPM: 63.6
2861 Female, age 67, both hemispheres 71.0
2620 Female, age 94, left hemisphere 68.8
1891 Female, age 85, both hemispheres 64.4
1867 Male, age 76, both hemispheres 61.8
2137 Male, age 80, left hemisphere 58.2
2436 Male, age 74, both hemispheres 57.2
Parahippocampal cortex
nTPM: 65.3
2622 Female, age 67, right hemisphere 75.7
2245 Female, age 91, both hemispheres 69.1
2532 Female, age 72, left hemisphere 68.8
2692 Male, age 74, both hemispheres 67.8
1850 Male, age 80, both hemispheres 65.3
2693 Female, age 94, both hemispheres 64.3
2250 Female, age 67, right hemisphere 62.3
1933 Female, age 85, both hemispheres 61.6
2018 Male, age 76, both hemispheres 59.7
1990 Female, age 91, right hemisphere 58.7
Perirhinal gyrus
nTPM: 66.1
2521 Female, age 94, right hemisphere 70.2
2848 Male, age 76, right hemisphere 69.4
1841 Female, age 85, right hemisphere 66.2
1794 Male, age 80, right hemisphere 63.9
1847 Female, age 91, left hemisphere 60.6
Subiculum
nTPM: 65.9
2438 Female, age 94, left hemisphere 80.3
1977 Female, age 85, both hemispheres 66.7
2042 Male, age 76, both hemispheres 65.3
2619 Male, age 74, both hemispheres 65.0
1901 Male, age 80, both hemispheres 61.3
2729 Female, age 91, right hemisphere 57.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.6
Samples: 197

Max nTPM: 32.0
Min nTPM: 8.2
Std nTPM: 3.7
Median nTPM: 19.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 32.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 31.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 31.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 30.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 28.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 28.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 28.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 28.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 28.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 27.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 26.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 184.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 184.5
FF:10169-103B7 60 years, female 186.9
FF:10153-102I9 76 years, female 182.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 79.1
Pig sample Sample description nTPM
Subiculum
nTPM: 72.6
Samples: 4

Max nTPM: 83.8
Min nTPM: 64.4
Sample A Female 83.8
Sample B Female 64.4
Sample C Male 71.6
Sample D Male 70.6
Dorsal hippocampus
nTPM: 63.4
Samples: 4

Max nTPM: 71.6
Min nTPM: 54.2
Sample A Female 65.7
Sample B Female 62.0
Sample C Male 71.6
Sample D Male 54.2
Entorhinal cortex
nTPM: 79.1
Samples: 4

Max nTPM: 89.3
Min nTPM: 68.8
Sample A Female 89.3
Sample B Female 68.8
Sample C Male 75.1
Sample D Male 83.0
Ventral hippocampus
nTPM: 65.0
Samples: 4

Max nTPM: 71.7
Min nTPM: 54.7
Sample A Female 67.2
Sample B Female 54.7
Sample C Male 71.7
Sample D Male 66.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.7
Samples: 4

Max nTPM: 38.8
Min nTPM: 26.9
Sample A Male 29.7
Sample B Male 26.9
Sample C Female 27.3
Sample D Female 38.8
Hippocampal formation
nTPM: 26.1
Samples: 4

Max nTPM: 30.9
Min nTPM: 21.2
Sample A Male 21.2
Sample B Male 30.9
Sample C Female 29.0
Sample D Female 23.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 19.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 19.8
72081816 Antisense, RP_051019_01_B03, Mouse strain C57BL/6J (56 days, male) 19.8

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