MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.7 nTPM
HPA Brain:76.9 nTPM
GTEx:19.7 nTPM
FANTOM5:210.6 Scaled Tags Per Million
Pig:73.7 nTPM
Mouse:28.8 nTPM
Allen mouse:17.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.6
2219 Male, age 76, both hemispheres 71.9
2666 Male, age 74, left hemisphere 71.8
1833 Male, age 53, unknown 70.7
1830 Male, age 51, unknown 68.0
1827 Male, age 72, unknown 66.1
1870 Female, age 42, unknown 65.9
2019 Male, age 18, unknown 65.3
2828 Female, age 72, unknown 65.0
2586 Male, age 75, left hemisphere 61.8
2411 Female, age 72, unknown 59.6
Dorsal raphe nucleus
nTPM: 60.9
2750 Male, age 76, both hemispheres 67.8
2047 Male, age 72, unknown 64.7
1828 Male, age 53, unknown 63.2
2016 Female, age 72, unknown 57.0
2298 Female, age 72, unknown 51.8
Inferior colliculus
nTPM: 65.0
2849 Male, age 72, unknown 74.2
1848 Female, age 42, unknown 65.8
1890 Male, age 53, unknown 63.0
2097 Female, age 72, unknown 57.1
Median raphe nucleus
nTPM: 76.9
2220 Male, age 76, midline 76.9
Periaquaductal grey, anterior
nTPM: 62.5
1947 Male, age 18, unknown 65.1
1795 Male, age 51, unknown 61.7
2502 Female, age 75, unknown 60.7
Periaquaductal grey, dorsal
nTPM: 64.9
2850 Male, age 76, both hemispheres 74.2
1831 Male, age 72, unknown 65.8
2464 Female, age 72, unknown 60.7
1840 Male, age 53, unknown 58.8
Periaquaductal grey, lateral
nTPM: 63.1
2140 Male, age 76, both hemispheres 69.5
2053 Male, age 18, unknown 62.0
2272 Male, age 74, both hemispheres 57.7
Pretectal area
nTPM: 67.6
1816 Male, age 51, unknown 73.3
1817 Female, age 42, unknown 72.9
1815 Male, age 53, unknown 71.7
1944 Female, age 72, unknown 71.1
2007 Male, age 72, unknown 69.1
2407 Male, age 75, both hemispheres 69.1
2825 Male, age 18, unknown 67.6
2316 Male, age 76, right hemisphere 65.8
2667 Female, age 75, unknown 65.7
2224 Female, age 72, unknown 62.8
2273 Male, age 74, both hemispheres 54.8
Red nucleus
nTPM: 68.2
2584 Male, age 75, left hemisphere 75.8
2823 Male, age 76, right hemisphere 74.1
2725 Female, age 75, unknown 70.8
2588 Male, age 74, left hemisphere 70.7
2503 Female, age 72, unknown 69.3
1865 Male, age 51, unknown 68.5
1904 Male, age 53, unknown 67.4
2785 Male, age 18, unknown 66.0
1954 Female, age 42, unknown 65.9
1821 Female, age 72, unknown 65.5
2769 Male, age 72, unknown 62.6
2227 Male, age 72, unknown 62.2
Substantia nigra
nTPM: 68.6
1941 Male, age 53, unknown 72.1
2699 Male, age 18, unknown 71.7
2409 Female, age 72, unknown 71.1
2665 Male, age 74, both hemispheres 71.0
2590 Female, age 75, unknown 67.8
2241 Male, age 72, unknown 67.5
1889 Female, age 72, unknown 67.0
1916 Female, age 42, unknown 66.9
2583 Male, age 75, right hemisphere 66.0
1851 Male, age 51, unknown 64.8
Superior colliculus
nTPM: 64.8
1913 Female, age 42, unknown 69.1
1895 Male, age 76, right hemisphere 66.8
2087 Female, age 72, unknown 66.8
2668 Female, age 75, unknown 66.6
2587 Male, age 74, left hemisphere 65.7
1839 Male, age 51, unknown 64.3
2261 Male, age 18, unknown 63.2
1796 Male, age 53, unknown 62.3
1995 Male, age 72, unknown 61.8
2664 Male, age 75, both hemispheres 61.6
Ventral tegmental area
nTPM: 66.7
2218 Male, age 76, both hemispheres 76.1
2223 Female, age 72, unknown 72.0
2410 Female, age 72, unknown 64.7
1942 Male, age 51, unknown 64.1
2021 Male, age 53, unknown 63.7
1915 Female, age 42, unknown 59.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.7
Samples: 139

Max nTPM: 34.4
Min nTPM: 11.5
Std nTPM: 3.4
Median nTPM: 19.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 27.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 26.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 26.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 25.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 25.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 25.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 25.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 25.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 210.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 210.6
FF:10158-103A5 76 years, female 210.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.8
Samples: 4

Max nTPM: 80.8
Min nTPM: 63.5
Sample A Female 65.6
Sample B Female 63.5
Sample C Male 80.8
Sample D Male 73.1
Midbrain
nTPM: 73.7
Samples: 4

Max nTPM: 89.4
Min nTPM: 62.3
Sample A Female 74.0
Sample B Female 62.3
Sample C Male 89.4
Sample D Male 69.2
Periaqueductal gray
nTPM: 62.1
Samples: 3

Max nTPM: 66.3
Min nTPM: 59.0
Sample B Female 61.0
Sample C Male 66.3
Sample D Male 59.0
Superior colliculi
nTPM: 70.7
Samples: 4

Max nTPM: 81.7
Min nTPM: 55.8
Sample A Female 66.8
Sample B Female 55.8
Sample C Male 81.7
Sample D Male 78.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.8
Samples: 4

Max nTPM: 31.9
Min nTPM: 22.5
Sample A Male 22.5
Sample B Male 31.9
Sample C Female 29.8
Sample D Female 30.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.4
72081816 Antisense, RP_051019_01_B03, Mouse strain C57BL/6J (56 days, male) 17.4

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