BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:5.2 nTPM
HPA Brain:54.8 nTPM
GTEx:5.2 nTPM
FANTOM5:61.3 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:5.5 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA025809
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 51.6
2289 Male, age 61, right hemisphere 62.6
2290 Female, age 72, unknown 56.7
1854 Male, age 80, left hemisphere 55.1
1857 Female, age 85, left hemisphere 53.6
2846 Female, age 79, unknown 49.9
2481 Female, age 94, left hemisphere 45.9
2288 Male, age 75, left hemisphere 45.2
1781 Male, age 74, unknown 43.4
Globus pallidus, externus
nTPM: 29.5
1996 Male, age 80, right hemisphere 35.2
2772 Female, age 79, unknown 29.7
2567 Female, age 72, unknown 29.4
2646 Male, age 61, right hemisphere 29.1
2395 Male, age 75, both hemispheres 24.3
Globus pallidus, internus
nTPM: 31.2
1818 Male, age 74, unknown 36.3
2037 Male, age 80, right hemisphere 36.2
2483 Female, age 94, right hemisphere 35.3
2566 Female, age 72, unknown 29.4
2287 Male, age 75, right hemisphere 28.9
2778 Female, age 91, both hemispheres 26.4
2111 Female, age 85, right hemisphere 26.2
Nucleus accumbens
nTPM: 54.8
2824 Male, age 61, right hemisphere 70.5
1856 Female, age 91, right hemisphere 67.4
1806 Female, age 85, left hemisphere 56.4
2698 Female, age 72, unknown 55.2
2732 Male, age 80, right hemisphere 52.9
1783 Male, age 74, unknown 50.1
2286 Male, age 75, left hemisphere 43.8
2391 Female, age 94, left hemisphere 41.8
Nucleus basalis of Meynert
nTPM: 41.9
2393 Male, age 80, right hemisphere 50.7
2484 Female, age 94, left hemisphere 45.8
2821 Male, age 75, both hemispheres 36.1
2569 Male, age 61, both hemispheres 34.9
Nucleus of the diagonal band
nTPM: 44.6
1979 Male, age 74, unknown 58.9
2029 Male, age 61, right hemisphere 45.9
1812 Female, age 91, both hemispheres 39.7
2775 Male, age 80, right hemisphere 39.3
2195 Female, age 85, both hemispheres 39.2
Putamen
nTPM: 49.7
1838 Male, age 80, right hemisphere 66.2
1937 Female, age 91, right hemisphere 58.6
2466 Female, age 79, unknown 48.4
2482 Female, age 94, left hemisphere 47.2
2489 Female, age 72, unknown 45.1
2647 Male, age 75, left hemisphere 42.1
1829 Male, age 74, unknown 40.6
Septal nuclei
nTPM: 46.2
2199 Male, age 80, right hemisphere 62.2
2009 Female, age 91, both hemispheres 51.7
2629 Female, age 94, right hemisphere 50.1
2059 Female, age 85, both hemispheres 42.7
2031 Female, age 72, unknown 40.1
1960 Male, age 74, unknown 38.5
2394 Male, age 61, left hemisphere 38.1
Stria terminalis, bed nucleus
nTPM: 41.4
2486 Female, age 94, both hemispheres 45.5
2201 Male, age 74, unknown 39.5
1974 Female, age 91, both hemispheres 39.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.3
Samples: 246

Max nTPM: 16.2
Min nTPM: 1.1
Std nTPM: 2.3
Median nTPM: 3.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 16.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 15.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 14.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 14.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 12.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 11.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 11.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 10.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 10.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 10.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 9.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.2
Samples: 246

Max nTPM: 20.6
Min nTPM: 0.7
Std nTPM: 2.6
Median nTPM: 4.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 20.6
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 17.5
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 13.2
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 13.0
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 11.5
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 10.8
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 10.8
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 10.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 10.1
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 9.9
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 9.8
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Brain - Putamen (basal ganglia)
Average nTPM: 2.8
Samples: 205

Max nTPM: 7.1
Min nTPM: 0.8
Std nTPM: 1.1
Median nTPM: 2.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 7.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 6.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 6.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 5.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 5.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 5.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 5.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 5.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 5.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 5.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 5.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.3
FF:10164-103B2 76 years, female 61.3
Nucleus accumbens
Scaled Tags Per Million: 38.7
FF:10037-101F1 23-56 years, mixed 38.7
Putamen
Scaled Tags Per Million: 52.8
FF:10176-103C5 60 years, female 52.8
Globus pallidus
Scaled Tags Per Million: 27.2
FF:10175-103C4 60 years, female 36.0
FF:10161-103A8 76 years, female 18.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.5
Pig sample Sample description nTPM
Caudate
nTPM: 10.5
Samples: 4

Max nTPM: 11.5
Min nTPM: 10.2
Sample A Female 11.5
Sample B Female 10.2
Sample C Male 10.2
Sample D Male 10.2
Putamen
nTPM: 7.9
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.5
Sample A Female 7.5
Sample B Female 8.5
Sample C Male 7.6
Sample D Male 7.8
Septum
nTPM: 9.4
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.5
Sample A Female 9.1
Sample B Female 9.3
Sample C Male 8.5
Sample D Male 10.6
Ventral pallidum
nTPM: 8.5
Samples: 4

Max nTPM: 10.2
Min nTPM: 6.4
Sample A Female 10.2
Sample B Female 8.5
Sample C Male 6.4
Sample D Male 9.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.6
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.9
Sample A Male 5.6
Sample B Male 4.1
Sample C Female 4.9
Sample D Female 3.9
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.7
Sample A Male 4.7
Sample B Male 5.3
Sample C Female 5.8
Sample D Female 6.3
Ventral forebrain
nTPM: 4.4
Samples: 4

Max nTPM: 6.3
Min nTPM: 2.6
Sample A Male 4.4
Sample B Male 4.1
Sample C Female 2.6
Sample D Female 6.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70565933 Antisense, RP_050628_01_G04, Mouse strain C57BL/6J (56 days, male) 0.3
74988750 Antisense, RP_060315_05_G05, Mouse strain C57BL/6J (56 days, male) 0.2
73716578 Antisense, RP_051206_03_D04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
70565933 Antisense, RP_050628_01_G04, Mouse strain C57BL/6J (56 days, male) 0.1
73716578 Antisense, RP_051206_03_D04, Mouse strain C57BL/6J (56 days, male) 0.1
74988750 Antisense, RP_060315_05_G05, Mouse strain C57BL/6J (56 days, male) 0.1

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