MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.5 nTPM
HPA Brain:55.6 nTPM
GTEx:38.5 nTPM
FANTOM5:56.1 Scaled Tags Per Million
Pig:75.8 nTPM
Mouse:43.6 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.0
2019 Male, age 18, unknown 51.3
1827 Male, age 72, unknown 48.0
1870 Female, age 42, unknown 47.2
2411 Female, age 72, unknown 46.8
1830 Male, age 51, unknown 44.6
1833 Male, age 53, unknown 44.2
2666 Male, age 74, left hemisphere 42.8
2828 Female, age 72, unknown 42.8
2586 Male, age 75, left hemisphere 42.7
2219 Male, age 76, both hemispheres 39.3
Dorsal raphe nucleus
nTPM: 55.6
2298 Female, age 72, unknown 67.3
2016 Female, age 72, unknown 53.9
2750 Male, age 76, both hemispheres 53.2
2047 Male, age 72, unknown 52.0
1828 Male, age 53, unknown 51.8
Inferior colliculus
nTPM: 49.3
2097 Female, age 72, unknown 57.9
1890 Male, age 53, unknown 51.0
1848 Female, age 42, unknown 46.8
2849 Male, age 72, unknown 41.2
Median raphe nucleus
nTPM: 55.5
2220 Male, age 76, midline 55.5
Periaquaductal grey, anterior
nTPM: 52.1
2502 Female, age 75, unknown 54.3
1947 Male, age 18, unknown 51.3
1795 Male, age 51, unknown 50.6
Periaquaductal grey, dorsal
nTPM: 50.2
2850 Male, age 76, both hemispheres 55.9
1840 Male, age 53, unknown 50.4
1831 Male, age 72, unknown 49.1
2464 Female, age 72, unknown 45.3
Periaquaductal grey, lateral
nTPM: 53.5
2272 Male, age 74, both hemispheres 60.0
2140 Male, age 76, both hemispheres 54.2
2053 Male, age 18, unknown 46.4
Pretectal area
nTPM: 51.5
2273 Male, age 74, both hemispheres 64.3
2224 Female, age 72, unknown 56.1
1817 Female, age 42, unknown 53.0
2007 Male, age 72, unknown 52.1
2667 Female, age 75, unknown 51.4
1944 Female, age 72, unknown 50.9
2316 Male, age 76, right hemisphere 50.8
1815 Male, age 53, unknown 50.7
1816 Male, age 51, unknown 50.7
2825 Male, age 18, unknown 44.7
2407 Male, age 75, both hemispheres 41.3
Red nucleus
nTPM: 46.2
1821 Female, age 72, unknown 51.5
2785 Male, age 18, unknown 49.9
1904 Male, age 53, unknown 48.9
2725 Female, age 75, unknown 48.0
1865 Male, age 51, unknown 47.9
2503 Female, age 72, unknown 47.7
2823 Male, age 76, right hemisphere 46.8
1954 Female, age 42, unknown 46.5
2227 Male, age 72, unknown 46.2
2769 Male, age 72, unknown 44.7
2584 Male, age 75, left hemisphere 38.4
2588 Male, age 74, left hemisphere 37.4
Substantia nigra
nTPM: 53.4
1916 Female, age 42, unknown 67.6
2241 Male, age 72, unknown 58.8
1851 Male, age 51, unknown 57.4
2409 Female, age 72, unknown 55.7
2699 Male, age 18, unknown 50.7
1889 Female, age 72, unknown 50.4
2590 Female, age 75, unknown 50.4
2665 Male, age 74, both hemispheres 49.7
1941 Male, age 53, unknown 48.8
2583 Male, age 75, right hemisphere 44.6
Superior colliculus
nTPM: 46.8
2261 Male, age 18, unknown 52.3
2087 Female, age 72, unknown 51.2
1995 Male, age 72, unknown 50.7
1796 Male, age 53, unknown 50.3
1913 Female, age 42, unknown 48.9
2587 Male, age 74, left hemisphere 47.9
2668 Female, age 75, unknown 44.8
1839 Male, age 51, unknown 44.5
1895 Male, age 76, right hemisphere 41.4
2664 Male, age 75, both hemispheres 36.1
Ventral tegmental area
nTPM: 53.1
2218 Male, age 76, both hemispheres 57.4
2410 Female, age 72, unknown 55.4
1915 Female, age 42, unknown 53.8
2021 Male, age 53, unknown 52.2
1942 Male, age 51, unknown 51.3
2223 Female, age 72, unknown 48.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 139

Max nTPM: 68.5
Min nTPM: 19.6
Std nTPM: 9.1
Median nTPM: 37.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 68.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 67.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 67.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 63.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 60.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 59.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 59.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 55.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 55.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 55.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 53.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.1
FF:10158-103A5 76 years, female 56.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.4
Samples: 4

Max nTPM: 71.3
Min nTPM: 58.9
Sample A Female 71.3
Sample B Female 70.4
Sample C Male 69.1
Sample D Male 58.9
Midbrain
nTPM: 69.6
Samples: 4

Max nTPM: 85.7
Min nTPM: 56.8
Sample A Female 85.7
Sample B Female 56.8
Sample C Male 75.1
Sample D Male 60.8
Periaqueductal gray
nTPM: 62.4
Samples: 3

Max nTPM: 68.0
Min nTPM: 59.1
Sample B Female 60.2
Sample C Male 68.0
Sample D Male 59.1
Superior colliculi
nTPM: 75.8
Samples: 4

Max nTPM: 97.9
Min nTPM: 60.8
Sample A Female 75.9
Sample B Female 97.9
Sample C Male 68.6
Sample D Male 60.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 47.2
Min nTPM: 42.1
Sample A Male 42.1
Sample B Male 42.5
Sample C Female 47.2
Sample D Female 42.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
100144515 Antisense, RP_110421_04_B04, Mouse strain C57BL/6J (56 days, male) 9.7
906 Antisense, RP_Baylor_103008, Mouse strain C57BL/6J (56 days, male) 2.9

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