MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:173.7 nTPM
HPA Brain:359.6 nTPM
GTEx:173.7 nTPM
FANTOM5:199.7 Scaled Tags Per Million
Pig:387.3 nTPM
Mouse:160.8 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 359.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 293.4
2586 Male, age 75, left hemisphere 355.5
2666 Male, age 74, left hemisphere 347.2
2219 Male, age 76, both hemispheres 330.2
1827 Male, age 72, unknown 321.9
2019 Male, age 18, unknown 307.7
2828 Female, age 72, unknown 275.9
1830 Male, age 51, unknown 259.4
1833 Male, age 53, unknown 252.0
1870 Female, age 42, unknown 244.3
2411 Female, age 72, unknown 240.1
Dorsal raphe nucleus
nTPM: 239.5
1828 Male, age 53, unknown 255.7
2750 Male, age 76, both hemispheres 252.8
2016 Female, age 72, unknown 233.8
2047 Male, age 72, unknown 228.2
2298 Female, age 72, unknown 227.1
Inferior colliculus
nTPM: 313.1
2097 Female, age 72, unknown 358.5
1890 Male, age 53, unknown 356.2
1848 Female, age 42, unknown 283.6
2849 Male, age 72, unknown 254.3
Median raphe nucleus
nTPM: 260.0
2220 Male, age 76, midline 260.0
Periaquaductal grey, anterior
nTPM: 359.6
1947 Male, age 18, unknown 410.9
2502 Female, age 75, unknown 376.4
1795 Male, age 51, unknown 291.4
Periaquaductal grey, dorsal
nTPM: 221.5
1831 Male, age 72, unknown 232.7
2464 Female, age 72, unknown 230.9
2850 Male, age 76, both hemispheres 224.0
1840 Male, age 53, unknown 198.4
Periaquaductal grey, lateral
nTPM: 241.6
2272 Male, age 74, both hemispheres 261.8
2053 Male, age 18, unknown 249.5
2140 Male, age 76, both hemispheres 213.6
Pretectal area
nTPM: 292.5
2007 Male, age 72, unknown 376.0
1816 Male, age 51, unknown 373.1
1817 Female, age 42, unknown 372.5
1815 Male, age 53, unknown 344.5
1944 Female, age 72, unknown 318.2
2407 Male, age 75, both hemispheres 285.7
2667 Female, age 75, unknown 241.0
2825 Male, age 18, unknown 237.6
2316 Male, age 76, right hemisphere 237.5
2273 Male, age 74, both hemispheres 227.9
2224 Female, age 72, unknown 203.7
Red nucleus
nTPM: 315.9
2584 Male, age 75, left hemisphere 356.9
1821 Female, age 72, unknown 349.9
2503 Female, age 72, unknown 347.5
1865 Male, age 51, unknown 329.7
2785 Male, age 18, unknown 318.1
2725 Female, age 75, unknown 312.6
2227 Male, age 72, unknown 303.5
1954 Female, age 42, unknown 301.7
2769 Male, age 72, unknown 298.1
2588 Male, age 74, left hemisphere 294.1
1904 Male, age 53, unknown 290.9
2823 Male, age 76, right hemisphere 287.4
Substantia nigra
nTPM: 318.8
1941 Male, age 53, unknown 363.5
1916 Female, age 42, unknown 347.4
1851 Male, age 51, unknown 335.8
1889 Female, age 72, unknown 331.0
2665 Male, age 74, both hemispheres 326.1
2241 Male, age 72, unknown 309.0
2590 Female, age 75, unknown 306.2
2583 Male, age 75, right hemisphere 300.8
2409 Female, age 72, unknown 288.5
2699 Male, age 18, unknown 280.2
Superior colliculus
nTPM: 294.6
2668 Female, age 75, unknown 344.1
2664 Male, age 75, both hemispheres 331.4
2261 Male, age 18, unknown 312.6
2087 Female, age 72, unknown 298.5
1796 Male, age 53, unknown 294.2
1913 Female, age 42, unknown 279.0
1995 Male, age 72, unknown 275.4
1895 Male, age 76, right hemisphere 271.1
2587 Male, age 74, left hemisphere 270.9
1839 Male, age 51, unknown 268.9
Ventral tegmental area
nTPM: 261.7
2410 Female, age 72, unknown 281.5
1915 Female, age 42, unknown 280.5
2218 Male, age 76, both hemispheres 272.1
1942 Male, age 51, unknown 269.3
2223 Female, age 72, unknown 253.4
2021 Male, age 53, unknown 213.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 173.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 173.7
Samples: 139

Max nTPM: 303.3
Min nTPM: 95.6
Std nTPM: 45.4
Median nTPM: 163.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 303.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 297.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 293.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 283.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 282.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 268.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 262.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 259.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 255.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 248.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 247.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 199.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 199.7
FF:10158-103A5 76 years, female 199.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 387.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 345.1
Samples: 4

Max nTPM: 403.8
Min nTPM: 266.9
Sample A Female 403.8
Sample B Female 266.9
Sample C Male 338.9
Sample D Male 370.8
Midbrain
nTPM: 387.3
Samples: 4

Max nTPM: 444.9
Min nTPM: 365.2
Sample A Female 444.9
Sample B Female 366.6
Sample C Male 372.5
Sample D Male 365.2
Periaqueductal gray
nTPM: 282.1
Samples: 3

Max nTPM: 297.6
Min nTPM: 269.8
Sample B Female 297.6
Sample C Male 279.0
Sample D Male 269.8
Superior colliculi
nTPM: 374.3
Samples: 4

Max nTPM: 423.2
Min nTPM: 248.6
Sample A Female 423.2
Sample B Female 248.6
Sample C Male 412.7
Sample D Male 412.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.8
Samples: 4

Max nTPM: 163.5
Min nTPM: 156.9
Sample A Male 161.3
Sample B Male 161.3
Sample C Female 163.5
Sample D Female 156.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
70445658 Antisense, RP_050614_04_C09, Mouse strain C57BL/6J (56 days, male) 7.8
74988529 Antisense, RP_060315_05_E08, Mouse strain C57BL/6J (56 days, male) 6.6

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