MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.3 nTPM
HPA Brain:63.3 nTPM
GTEx:37.3 nTPM
FANTOM5:200.5 Scaled Tags Per Million
Pig:122.6 nTPM
Mouse:163.6 nTPM
Allen mouse:20.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.6
2019 Male, age 18, unknown 69.3
1870 Female, age 42, unknown 65.4
2411 Female, age 72, unknown 61.5
1827 Male, age 72, unknown 58.5
1833 Male, age 53, unknown 57.5
1830 Male, age 51, unknown 55.5
2828 Female, age 72, unknown 52.9
2586 Male, age 75, left hemisphere 49.9
2219 Male, age 76, both hemispheres 49.0
2666 Male, age 74, left hemisphere 46.6
Dorsal raphe nucleus
nTPM: 58.8
2750 Male, age 76, both hemispheres 66.3
2298 Female, age 72, unknown 62.3
1828 Male, age 53, unknown 60.1
2016 Female, age 72, unknown 52.7
2047 Male, age 72, unknown 52.7
Inferior colliculus
nTPM: 55.5
2097 Female, age 72, unknown 64.9
1848 Female, age 42, unknown 55.7
1890 Male, age 53, unknown 53.0
2849 Male, age 72, unknown 48.4
Median raphe nucleus
nTPM: 57.1
2220 Male, age 76, midline 57.1
Periaquaductal grey, anterior
nTPM: 53.4
1947 Male, age 18, unknown 55.3
2502 Female, age 75, unknown 53.3
1795 Male, age 51, unknown 51.5
Periaquaductal grey, dorsal
nTPM: 52.4
1840 Male, age 53, unknown 53.5
2850 Male, age 76, both hemispheres 53.3
2464 Female, age 72, unknown 52.7
1831 Male, age 72, unknown 50.1
Periaquaductal grey, lateral
nTPM: 52.2
2272 Male, age 74, both hemispheres 54.3
2053 Male, age 18, unknown 53.3
2140 Male, age 76, both hemispheres 49.2
Pretectal area
nTPM: 60.9
1817 Female, age 42, unknown 66.9
2007 Male, age 72, unknown 66.3
1944 Female, age 72, unknown 64.1
1815 Male, age 53, unknown 63.5
2667 Female, age 75, unknown 62.5
1816 Male, age 51, unknown 62.2
2273 Male, age 74, both hemispheres 60.6
2224 Female, age 72, unknown 59.9
2407 Male, age 75, both hemispheres 56.6
2316 Male, age 76, right hemisphere 55.8
2825 Male, age 18, unknown 51.0
Red nucleus
nTPM: 60.9
1821 Female, age 72, unknown 79.0
2725 Female, age 75, unknown 64.0
2785 Male, age 18, unknown 63.4
1954 Female, age 42, unknown 63.0
1904 Male, age 53, unknown 61.3
1865 Male, age 51, unknown 60.9
2823 Male, age 76, right hemisphere 60.4
2769 Male, age 72, unknown 58.5
2584 Male, age 75, left hemisphere 57.6
2227 Male, age 72, unknown 57.1
2503 Female, age 72, unknown 55.5
2588 Male, age 74, left hemisphere 50.0
Substantia nigra
nTPM: 63.3
2241 Male, age 72, unknown 83.2
1916 Female, age 42, unknown 70.6
1851 Male, age 51, unknown 68.6
1889 Female, age 72, unknown 66.8
1941 Male, age 53, unknown 66.3
2409 Female, age 72, unknown 59.2
2583 Male, age 75, right hemisphere 58.6
2590 Female, age 75, unknown 54.8
2699 Male, age 18, unknown 53.8
2665 Male, age 74, both hemispheres 50.9
Superior colliculus
nTPM: 56.7
2587 Male, age 74, left hemisphere 61.6
1895 Male, age 76, right hemisphere 60.6
1913 Female, age 42, unknown 59.7
2668 Female, age 75, unknown 59.4
2261 Male, age 18, unknown 57.3
2087 Female, age 72, unknown 56.8
1839 Male, age 51, unknown 56.3
1995 Male, age 72, unknown 54.3
1796 Male, age 53, unknown 53.4
2664 Male, age 75, both hemispheres 47.5
Ventral tegmental area
nTPM: 56.0
2223 Female, age 72, unknown 60.5
2218 Male, age 76, both hemispheres 58.4
2410 Female, age 72, unknown 57.4
1915 Female, age 42, unknown 56.4
1942 Male, age 51, unknown 52.2
2021 Male, age 53, unknown 51.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.3
Samples: 139

Max nTPM: 55.3
Min nTPM: 25.2
Std nTPM: 6.1
Median nTPM: 36.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 55.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 54.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 52.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 51.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 51.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 49.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 49.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 49.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 200.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 200.5
FF:10158-103A5 76 years, female 200.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 122.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 108.7
Samples: 4

Max nTPM: 134.7
Min nTPM: 90.5
Sample A Female 134.7
Sample B Female 90.5
Sample C Male 106.6
Sample D Male 103.0
Midbrain
nTPM: 122.6
Samples: 4

Max nTPM: 143.0
Min nTPM: 107.9
Sample A Female 143.0
Sample B Female 111.2
Sample C Male 128.2
Sample D Male 107.9
Periaqueductal gray
nTPM: 94.7
Samples: 3

Max nTPM: 99.6
Min nTPM: 89.8
Sample B Female 99.6
Sample C Male 94.8
Sample D Male 89.8
Superior colliculi
nTPM: 120.7
Samples: 4

Max nTPM: 138.7
Min nTPM: 86.9
Sample A Female 137.9
Sample B Female 86.9
Sample C Male 138.7
Sample D Male 119.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 163.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.6
Samples: 4

Max nTPM: 174.0
Min nTPM: 154.5
Sample A Male 154.5
Sample B Male 164.2
Sample C Female 174.0
Sample D Female 161.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
70539158 Antisense, RP_050324_01_A10, Mouse strain C57BL/6J (56 days, male) 20.2

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