MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:222.3 nTPM
HPA Brain:92.9 nTPM
GTEx:222.3 nTPM
FANTOM5:197.8 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:46.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.7
2411 Female, age 72, unknown 99.4
1870 Female, age 42, unknown 94.1
1833 Male, age 53, unknown 87.9
1827 Male, age 72, unknown 83.6
2019 Male, age 18, unknown 83.1
1830 Male, age 51, unknown 81.0
2828 Female, age 72, unknown 71.8
2219 Male, age 76, both hemispheres 70.9
2666 Male, age 74, left hemisphere 67.0
2586 Male, age 75, left hemisphere 58.1
Dorsal raphe nucleus
nTPM: 88.3
2298 Female, age 72, unknown 98.5
2750 Male, age 76, both hemispheres 95.5
1828 Male, age 53, unknown 88.4
2047 Male, age 72, unknown 87.3
2016 Female, age 72, unknown 72.0
Inferior colliculus
nTPM: 79.9
1890 Male, age 53, unknown 83.4
2097 Female, age 72, unknown 82.9
1848 Female, age 42, unknown 78.5
2849 Male, age 72, unknown 74.7
Median raphe nucleus
nTPM: 91.6
2220 Male, age 76, midline 91.6
Periaquaductal grey, anterior
nTPM: 85.1
1947 Male, age 18, unknown 94.2
2502 Female, age 75, unknown 85.0
1795 Male, age 51, unknown 76.2
Periaquaductal grey, dorsal
nTPM: 74.7
2850 Male, age 76, both hemispheres 82.3
1840 Male, age 53, unknown 77.0
2464 Female, age 72, unknown 72.6
1831 Male, age 72, unknown 67.1
Periaquaductal grey, lateral
nTPM: 73.9
2053 Male, age 18, unknown 78.2
2272 Male, age 74, both hemispheres 75.4
2140 Male, age 76, both hemispheres 68.0
Pretectal area
nTPM: 81.4
2007 Male, age 72, unknown 93.0
1817 Female, age 42, unknown 90.2
1815 Male, age 53, unknown 88.7
1816 Male, age 51, unknown 88.1
1944 Female, age 72, unknown 85.0
2316 Male, age 76, right hemisphere 80.0
2825 Male, age 18, unknown 79.8
2407 Male, age 75, both hemispheres 77.1
2224 Female, age 72, unknown 76.0
2667 Female, age 75, unknown 69.3
2273 Male, age 74, both hemispheres 67.7
Red nucleus
nTPM: 90.2
1821 Female, age 72, unknown 124.4
2725 Female, age 75, unknown 97.6
1904 Male, age 53, unknown 92.4
2769 Male, age 72, unknown 90.0
1865 Male, age 51, unknown 89.7
2503 Female, age 72, unknown 89.6
1954 Female, age 42, unknown 89.2
2823 Male, age 76, right hemisphere 88.4
2588 Male, age 74, left hemisphere 85.2
2227 Male, age 72, unknown 84.9
2785 Male, age 18, unknown 80.4
2584 Male, age 75, left hemisphere 70.4
Substantia nigra
nTPM: 92.9
1916 Female, age 42, unknown 118.9
1889 Female, age 72, unknown 107.7
2241 Male, age 72, unknown 105.7
1851 Male, age 51, unknown 101.6
2590 Female, age 75, unknown 98.1
2409 Female, age 72, unknown 86.3
2699 Male, age 18, unknown 83.6
2665 Male, age 74, both hemispheres 83.2
1941 Male, age 53, unknown 77.0
2583 Male, age 75, right hemisphere 67.2
Superior colliculus
nTPM: 81.0
2587 Male, age 74, left hemisphere 110.8
1895 Male, age 76, right hemisphere 95.1
1913 Female, age 42, unknown 80.4
2668 Female, age 75, unknown 80.0
2261 Male, age 18, unknown 79.9
1796 Male, age 53, unknown 78.2
1839 Male, age 51, unknown 77.0
2087 Female, age 72, unknown 72.6
1995 Male, age 72, unknown 71.2
2664 Male, age 75, both hemispheres 64.9
Ventral tegmental area
nTPM: 91.0
2410 Female, age 72, unknown 107.4
1915 Female, age 42, unknown 92.9
2223 Female, age 72, unknown 91.8
2218 Male, age 76, both hemispheres 88.9
1942 Male, age 51, unknown 84.4
2021 Male, age 53, unknown 80.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 222.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 222.3
Samples: 139

Max nTPM: 513.5
Min nTPM: 117.6
Std nTPM: 62.4
Median nTPM: 210.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 513.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 468.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 392.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 364.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 355.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 344.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 338.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 323.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 314.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 310.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 308.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 197.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 197.8
FF:10158-103A5 76 years, female 197.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.1
Samples: 4

Max nTPM: 57.1
Min nTPM: 21.0
Sample A Female 57.1
Sample B Female 35.5
Sample C Male 42.9
Sample D Male 21.0
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 48.3
Min nTPM: 30.5
Sample A Female 36.5
Sample B Female 30.5
Sample C Male 48.3
Sample D Male 39.6
Periaqueductal gray
nTPM: 35.4
Samples: 3

Max nTPM: 43.2
Min nTPM: 30.5
Sample B Female 32.4
Sample C Male 43.2
Sample D Male 30.5
Superior colliculi
nTPM: 42.8
Samples: 4

Max nTPM: 52.4
Min nTPM: 27.9
Sample A Female 48.1
Sample B Female 42.6
Sample C Male 52.4
Sample D Male 27.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.8
Samples: 4

Max nTPM: 51.4
Min nTPM: 42.6
Sample A Male 48.9
Sample B Male 42.6
Sample C Female 44.2
Sample D Female 51.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
75198184 Antisense, RP_060502_02_B05, Mouse strain C57BL/6J (56 days, male) 0.4

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