MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.1 nTPM
HPA Brain:99.0 nTPM
GTEx:85.1 nTPM
FANTOM5:98.3 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:152.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.7
2411 Female, age 72, unknown 86.7
2019 Male, age 18, unknown 81.8
2219 Male, age 76, both hemispheres 78.1
1870 Female, age 42, unknown 74.0
1827 Male, age 72, unknown 71.3
2828 Female, age 72, unknown 59.3
1833 Male, age 53, unknown 57.5
2666 Male, age 74, left hemisphere 57.2
1830 Male, age 51, unknown 56.5
2586 Male, age 75, left hemisphere 44.7
Dorsal raphe nucleus
nTPM: 85.8
2298 Female, age 72, unknown 113.1
2750 Male, age 76, both hemispheres 90.0
2047 Male, age 72, unknown 84.9
1828 Male, age 53, unknown 83.2
2016 Female, age 72, unknown 57.7
Inferior colliculus
nTPM: 62.9
2097 Female, age 72, unknown 81.2
1890 Male, age 53, unknown 60.0
1848 Female, age 42, unknown 58.5
2849 Male, age 72, unknown 51.8
Median raphe nucleus
nTPM: 99.0
2220 Male, age 76, midline 99.0
Periaquaductal grey, anterior
nTPM: 75.1
1947 Male, age 18, unknown 79.9
1795 Male, age 51, unknown 74.3
2502 Female, age 75, unknown 71.2
Periaquaductal grey, dorsal
nTPM: 58.8
1840 Male, age 53, unknown 62.5
2850 Male, age 76, both hemispheres 59.8
2464 Female, age 72, unknown 59.6
1831 Male, age 72, unknown 53.2
Periaquaductal grey, lateral
nTPM: 57.9
2272 Male, age 74, both hemispheres 67.3
2053 Male, age 18, unknown 54.4
2140 Male, age 76, both hemispheres 51.9
Pretectal area
nTPM: 78.9
2007 Male, age 72, unknown 98.9
1816 Male, age 51, unknown 97.7
1944 Female, age 72, unknown 91.0
1817 Female, age 42, unknown 88.9
2224 Female, age 72, unknown 87.8
2273 Male, age 74, both hemispheres 80.7
1815 Male, age 53, unknown 77.7
2667 Female, age 75, unknown 76.1
2825 Male, age 18, unknown 60.8
2407 Male, age 75, both hemispheres 58.3
2316 Male, age 76, right hemisphere 49.5
Red nucleus
nTPM: 62.2
1821 Female, age 72, unknown 81.3
2725 Female, age 75, unknown 74.2
2785 Male, age 18, unknown 71.0
1954 Female, age 42, unknown 63.4
1865 Male, age 51, unknown 61.9
2823 Male, age 76, right hemisphere 59.3
2227 Male, age 72, unknown 58.2
2769 Male, age 72, unknown 58.1
1904 Male, age 53, unknown 57.7
2503 Female, age 72, unknown 56.6
2584 Male, age 75, left hemisphere 53.6
2588 Male, age 74, left hemisphere 51.4
Substantia nigra
nTPM: 92.1
2241 Male, age 72, unknown 127.6
1916 Female, age 42, unknown 120.8
1941 Male, age 53, unknown 119.5
1851 Male, age 51, unknown 106.0
2409 Female, age 72, unknown 94.7
1889 Female, age 72, unknown 91.9
2699 Male, age 18, unknown 71.3
2665 Male, age 74, both hemispheres 68.1
2590 Female, age 75, unknown 62.1
2583 Male, age 75, right hemisphere 58.9
Superior colliculus
nTPM: 65.0
2668 Female, age 75, unknown 81.2
2587 Male, age 74, left hemisphere 78.6
2087 Female, age 72, unknown 75.8
1796 Male, age 53, unknown 72.1
2261 Male, age 18, unknown 69.5
1895 Male, age 76, right hemisphere 69.1
1913 Female, age 42, unknown 57.6
1839 Male, age 51, unknown 55.6
1995 Male, age 72, unknown 46.4
2664 Male, age 75, both hemispheres 44.6
Ventral tegmental area
nTPM: 85.0
2410 Female, age 72, unknown 96.8
2218 Male, age 76, both hemispheres 95.3
1915 Female, age 42, unknown 92.5
2223 Female, age 72, unknown 86.0
1942 Male, age 51, unknown 74.2
2021 Male, age 53, unknown 65.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.1
Samples: 139

Max nTPM: 293.7
Min nTPM: 37.6
Std nTPM: 40.6
Median nTPM: 71.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 293.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 264.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 226.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 203.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 186.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 159.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 153.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 150.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 150.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 142.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 138.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.3
FF:10158-103A5 76 years, female 98.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.7
Samples: 4

Max nTPM: 41.3
Min nTPM: 15.6
Sample A Female 41.3
Sample B Female 23.1
Sample C Male 30.9
Sample D Male 15.6
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 32.8
Min nTPM: 24.7
Sample A Female 27.7
Sample B Female 24.7
Sample C Male 32.8
Sample D Male 26.9
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 24.1
Min nTPM: 17.5
Sample B Female 19.1
Sample C Male 24.1
Sample D Male 17.5
Superior colliculi
nTPM: 29.1
Samples: 4

Max nTPM: 36.3
Min nTPM: 21.8
Sample A Female 34.1
Sample B Female 21.8
Sample C Male 36.3
Sample D Male 24.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 152.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.0
Samples: 4

Max nTPM: 156.4
Min nTPM: 147.2
Sample A Male 153.1
Sample B Male 155.1
Sample C Female 156.4
Sample D Female 147.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73423926 Antisense, RP_051019_03_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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