MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.2 nTPM
HPA Brain:53.6 nTPM
GTEx:45.2 nTPM
FANTOM5:165.5 Scaled Tags Per Million
Pig:43.0 nTPM
Mouse:25.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.2
2586 Male, age 75, left hemisphere 52.6
2219 Male, age 76, both hemispheres 52.1
1870 Female, age 42, unknown 51.5
2828 Female, age 72, unknown 50.2
2019 Male, age 18, unknown 47.7
2666 Male, age 74, left hemisphere 45.4
1827 Male, age 72, unknown 43.5
1833 Male, age 53, unknown 43.3
2411 Female, age 72, unknown 43.3
1830 Male, age 51, unknown 42.3
Dorsal raphe nucleus
nTPM: 51.5
2298 Female, age 72, unknown 64.0
2016 Female, age 72, unknown 55.7
1828 Male, age 53, unknown 47.2
2047 Male, age 72, unknown 46.4
2750 Male, age 76, both hemispheres 44.3
Inferior colliculus
nTPM: 51.0
2097 Female, age 72, unknown 55.9
1890 Male, age 53, unknown 50.8
1848 Female, age 42, unknown 49.9
2849 Male, age 72, unknown 47.4
Median raphe nucleus
nTPM: 53.6
2220 Male, age 76, midline 53.6
Periaquaductal grey, anterior
nTPM: 52.9
2502 Female, age 75, unknown 60.6
1795 Male, age 51, unknown 51.6
1947 Male, age 18, unknown 46.4
Periaquaductal grey, dorsal
nTPM: 52.3
2850 Male, age 76, both hemispheres 59.8
1840 Male, age 53, unknown 56.7
1831 Male, age 72, unknown 47.1
2464 Female, age 72, unknown 45.6
Periaquaductal grey, lateral
nTPM: 52.4
2140 Male, age 76, both hemispheres 55.7
2272 Male, age 74, both hemispheres 53.4
2053 Male, age 18, unknown 48.0
Pretectal area
nTPM: 48.8
2224 Female, age 72, unknown 56.8
2273 Male, age 74, both hemispheres 56.4
1817 Female, age 42, unknown 51.9
1816 Male, age 51, unknown 50.2
2667 Female, age 75, unknown 50.0
2825 Male, age 18, unknown 49.0
1944 Female, age 72, unknown 47.2
2316 Male, age 76, right hemisphere 46.1
1815 Male, age 53, unknown 45.7
2007 Male, age 72, unknown 44.5
2407 Male, age 75, both hemispheres 39.3
Red nucleus
nTPM: 48.1
2503 Female, age 72, unknown 57.4
1954 Female, age 42, unknown 54.4
2227 Male, age 72, unknown 54.1
2769 Male, age 72, unknown 51.3
1904 Male, age 53, unknown 50.0
2785 Male, age 18, unknown 50.0
1821 Female, age 72, unknown 49.5
2725 Female, age 75, unknown 47.4
1865 Male, age 51, unknown 47.0
2588 Male, age 74, left hemisphere 39.9
2584 Male, age 75, left hemisphere 38.8
2823 Male, age 76, right hemisphere 37.7
Substantia nigra
nTPM: 47.2
2665 Male, age 74, both hemispheres 54.2
2241 Male, age 72, unknown 52.3
2699 Male, age 18, unknown 51.3
1916 Female, age 42, unknown 48.7
1851 Male, age 51, unknown 47.6
2409 Female, age 72, unknown 44.7
2583 Male, age 75, right hemisphere 43.8
1889 Female, age 72, unknown 43.6
1941 Male, age 53, unknown 43.1
2590 Female, age 75, unknown 43.0
Superior colliculus
nTPM: 46.3
1796 Male, age 53, unknown 52.7
1995 Male, age 72, unknown 52.3
1913 Female, age 42, unknown 50.9
2261 Male, age 18, unknown 48.7
2087 Female, age 72, unknown 48.1
1839 Male, age 51, unknown 46.5
2587 Male, age 74, left hemisphere 46.5
2668 Female, age 75, unknown 42.7
2664 Male, age 75, both hemispheres 39.0
1895 Male, age 76, right hemisphere 36.1
Ventral tegmental area
nTPM: 50.2
2223 Female, age 72, unknown 58.1
1942 Male, age 51, unknown 54.4
2021 Male, age 53, unknown 52.0
1915 Female, age 42, unknown 46.8
2218 Male, age 76, both hemispheres 46.4
2410 Female, age 72, unknown 43.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.2
Samples: 139

Max nTPM: 96.7
Min nTPM: 24.4
Std nTPM: 11.9
Median nTPM: 43.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 96.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 80.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 80.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 78.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 74.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 72.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 69.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 66.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 66.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 65.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 64.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 165.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 165.5
FF:10158-103A5 76 years, female 165.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.2
Samples: 4

Max nTPM: 45.7
Min nTPM: 32.7
Sample A Female 45.7
Sample B Female 41.3
Sample C Male 32.7
Sample D Male 33.2
Midbrain
nTPM: 43.0
Samples: 4

Max nTPM: 55.7
Min nTPM: 30.5
Sample A Female 55.7
Sample B Female 47.4
Sample C Male 38.3
Sample D Male 30.5
Periaqueductal gray
nTPM: 41.0
Samples: 3

Max nTPM: 42.1
Min nTPM: 39.0
Sample B Female 41.9
Sample C Male 39.0
Sample D Male 42.1
Superior colliculi
nTPM: 40.0
Samples: 4

Max nTPM: 45.9
Min nTPM: 35.1
Sample A Female 42.6
Sample B Female 45.9
Sample C Male 36.5
Sample D Male 35.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 25.9
Min nTPM: 24.6
Sample A Male 25.5
Sample B Male 25.9
Sample C Female 24.6
Sample D Female 25.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
631720 Antisense, RP_040907_01_B11, Mouse strain C57BL/6J (56 days, male) 0.1

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