MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.3 nTPM
HPA Brain:84.9 nTPM
GTEx:88.3 nTPM
FANTOM5:129.3 Scaled Tags Per Million
Pig:55.5 nTPM
Mouse:92.5 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.5
2019 Male, age 18, unknown 81.9
1830 Male, age 51, unknown 80.9
1833 Male, age 53, unknown 80.5
2411 Female, age 72, unknown 79.8
1827 Male, age 72, unknown 77.1
1870 Female, age 42, unknown 76.8
2828 Female, age 72, unknown 72.3
2666 Male, age 74, left hemisphere 69.7
2586 Male, age 75, left hemisphere 68.4
2219 Male, age 76, both hemispheres 67.9
Dorsal raphe nucleus
nTPM: 71.3
2016 Female, age 72, unknown 75.9
1828 Male, age 53, unknown 74.7
2750 Male, age 76, both hemispheres 74.5
2047 Male, age 72, unknown 67.0
2298 Female, age 72, unknown 64.3
Inferior colliculus
nTPM: 74.3
1890 Male, age 53, unknown 77.3
2849 Male, age 72, unknown 75.5
2097 Female, age 72, unknown 72.9
1848 Female, age 42, unknown 71.6
Median raphe nucleus
nTPM: 66.9
2220 Male, age 76, midline 66.9
Periaquaductal grey, anterior
nTPM: 72.7
2502 Female, age 75, unknown 79.2
1947 Male, age 18, unknown 74.4
1795 Male, age 51, unknown 64.4
Periaquaductal grey, dorsal
nTPM: 76.8
2850 Male, age 76, both hemispheres 85.4
1831 Male, age 72, unknown 75.8
1840 Male, age 53, unknown 73.1
2464 Female, age 72, unknown 72.9
Periaquaductal grey, lateral
nTPM: 71.6
2140 Male, age 76, both hemispheres 80.4
2053 Male, age 18, unknown 67.6
2272 Male, age 74, both hemispheres 66.8
Pretectal area
nTPM: 75.3
2407 Male, age 75, both hemispheres 82.3
1815 Male, age 53, unknown 81.1
1817 Female, age 42, unknown 81.1
1816 Male, age 51, unknown 80.4
2007 Male, age 72, unknown 79.2
1944 Female, age 72, unknown 76.4
2316 Male, age 76, right hemisphere 75.3
2825 Male, age 18, unknown 73.7
2273 Male, age 74, both hemispheres 70.3
2224 Female, age 72, unknown 65.5
2667 Female, age 75, unknown 63.3
Red nucleus
nTPM: 84.9
2503 Female, age 72, unknown 93.9
1904 Male, age 53, unknown 91.3
1865 Male, age 51, unknown 90.5
1821 Female, age 72, unknown 88.3
2823 Male, age 76, right hemisphere 88.1
2588 Male, age 74, left hemisphere 84.9
1954 Female, age 42, unknown 83.5
2785 Male, age 18, unknown 82.4
2227 Male, age 72, unknown 81.6
2769 Male, age 72, unknown 80.1
2725 Female, age 75, unknown 78.1
2584 Male, age 75, left hemisphere 75.8
Substantia nigra
nTPM: 76.9
2590 Female, age 75, unknown 84.4
2409 Female, age 72, unknown 80.8
2583 Male, age 75, right hemisphere 80.7
2699 Male, age 18, unknown 78.6
2665 Male, age 74, both hemispheres 78.1
2241 Male, age 72, unknown 76.8
1851 Male, age 51, unknown 74.6
1916 Female, age 42, unknown 74.2
1889 Female, age 72, unknown 72.9
1941 Male, age 53, unknown 67.8
Superior colliculus
nTPM: 75.8
1913 Female, age 42, unknown 81.8
1995 Male, age 72, unknown 81.2
2668 Female, age 75, unknown 80.7
1895 Male, age 76, right hemisphere 80.1
2587 Male, age 74, left hemisphere 79.0
2087 Female, age 72, unknown 74.3
2261 Male, age 18, unknown 73.0
1839 Male, age 51, unknown 72.9
1796 Male, age 53, unknown 68.0
2664 Male, age 75, both hemispheres 66.9
Ventral tegmental area
nTPM: 71.1
2223 Female, age 72, unknown 76.9
2410 Female, age 72, unknown 76.0
1942 Male, age 51, unknown 69.4
2021 Male, age 53, unknown 68.9
1915 Female, age 42, unknown 68.4
2218 Male, age 76, both hemispheres 67.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.3
Samples: 139

Max nTPM: 144.9
Min nTPM: 56.9
Std nTPM: 18.8
Median nTPM: 83.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 144.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 133.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 133.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 133.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 131.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 130.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 130.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 127.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 123.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 121.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 118.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.3
FF:10158-103A5 76 years, female 129.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.3
Samples: 4

Max nTPM: 56.3
Min nTPM: 47.0
Sample A Female 52.9
Sample B Female 53.1
Sample C Male 47.0
Sample D Male 56.3
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 65.1
Min nTPM: 50.2
Sample A Female 65.1
Sample B Female 55.3
Sample C Male 51.5
Sample D Male 50.2
Periaqueductal gray
nTPM: 51.4
Samples: 3

Max nTPM: 54.1
Min nTPM: 48.6
Sample B Female 54.1
Sample C Male 48.6
Sample D Male 51.4
Superior colliculi
nTPM: 52.9
Samples: 4

Max nTPM: 55.2
Min nTPM: 50.7
Sample A Female 52.6
Sample B Female 52.9
Sample C Male 55.2
Sample D Male 50.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.6
Samples: 4

Max nTPM: 98.6
Min nTPM: 83.2
Sample A Male 83.2
Sample B Male 91.2
Sample C Female 97.2
Sample D Female 98.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
68157419 Antisense, RP_041116_02_F12, Mouse strain C57BL/6J (56 days, male) 4.9

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