HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:66.4 nTPM
HPA Brain:67.2 nTPM
GTEx:66.4 nTPM
FANTOM5:104.1 Scaled Tags Per Million
Pig:101.3 nTPM
Mouse:56.6 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA053727
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 67.2
Sample id Sample description nTPM
Hippocampus
nTPM: 52.8
1855 Male, age 76, left hemisphere 62.9
1898 Male, age 80, left hemisphere 57.5
2621 Female, age 67, right hemisphere 55.7
2148 Female, age 91, left hemisphere 52.5
2529 Female, age 94, left hemisphere 44.1
1911 Female, age 85, right hemisphere 43.9
Dentate gyrus
nTPM: 53.1
2010 Male, age 76, both hemispheres 67.2
2246 Female, age 85, both hemispheres 56.8
2531 Female, age 67, both hemispheres 55.5
1927 Female, age 91, both hemispheres 48.4
2530 Female, age 94, left hemisphere 47.6
2528 Male, age 74, both hemispheres 43.4
Entorhinal gyrus
nTPM: 52.6
1938 Female, age 85, left hemisphere 60.6
2764 Male, age 80, right hemisphere 56.8
1787 Male, age 76, left hemisphere 54.9
2686 Male, age 75, right hemisphere 52.5
2613 Female, age 94, left hemisphere 47.5
2117 Female, age 91, right hemisphere 43.5
Hippocampus, CA1
nTPM: 64.8
2045 Male, age 76, both hemispheres 96.3
2749 Male, age 80, left hemisphere 77.3
1873 Female, age 85, both hemispheres 57.3
2082 Female, age 91, right hemisphere 46.6
2527 Male, age 74, both hemispheres 46.6
Hippocampus, CA2
nTPM: 52.4
1892 Male, age 76, both hemispheres 70.3
1940 Female, age 85, left hemisphere 59.4
1963 Male, age 80, left hemisphere 51.6
2437 Female, age 94, left hemisphere 44.7
2249 Male, age 74, both hemispheres 44.5
2113 Female, age 91, right hemisphere 44.1
Hippocampus, CA3
nTPM: 56.1
2620 Female, age 94, left hemisphere 74.0
2137 Male, age 80, left hemisphere 63.2
1867 Male, age 76, both hemispheres 61.4
2861 Female, age 67, both hemispheres 52.4
1891 Female, age 85, both hemispheres 49.2
2436 Male, age 74, both hemispheres 36.3
Parahippocampal cortex
nTPM: 52.0
1850 Male, age 80, both hemispheres 64.1
1933 Female, age 85, both hemispheres 60.1
2018 Male, age 76, both hemispheres 54.0
2245 Female, age 91, both hemispheres 53.8
2532 Female, age 72, left hemisphere 53.4
2693 Female, age 94, both hemispheres 53.0
2622 Female, age 67, right hemisphere 49.5
2250 Female, age 67, right hemisphere 47.3
1990 Female, age 91, right hemisphere 43.2
2692 Male, age 74, both hemispheres 41.1
Perirhinal gyrus
nTPM: 67.2
2848 Male, age 76, right hemisphere 72.5
2521 Female, age 94, right hemisphere 71.4
1794 Male, age 80, right hemisphere 65.2
1847 Female, age 91, left hemisphere 65.1
1841 Female, age 85, right hemisphere 61.9
Subiculum
nTPM: 48.1
1977 Female, age 85, both hemispheres 55.6
2042 Male, age 76, both hemispheres 52.1
1901 Male, age 80, both hemispheres 50.4
2729 Female, age 91, right hemisphere 48.0
2438 Female, age 94, left hemisphere 41.8
2619 Male, age 74, both hemispheres 40.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 66.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 66.4
Samples: 197

Max nTPM: 116.5
Min nTPM: 26.0
Std nTPM: 15.8
Median nTPM: 65.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 116.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 113.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 113.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 107.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 107.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 103.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 97.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 96.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 96.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 93.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 93.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 104.1
FF:10169-103B7 60 years, female 126.7
FF:10153-102I9 76 years, female 81.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 101.3
Pig sample Sample description nTPM
Subiculum
nTPM: 88.5
Samples: 4

Max nTPM: 117.1
Min nTPM: 73.8
Sample A Female 117.1
Sample B Female 80.6
Sample C Male 73.8
Sample D Male 82.4
Dorsal hippocampus
nTPM: 99.5
Samples: 4

Max nTPM: 121.0
Min nTPM: 76.7
Sample A Female 121.0
Sample B Female 102.9
Sample C Male 97.4
Sample D Male 76.7
Entorhinal cortex
nTPM: 101.3
Samples: 4

Max nTPM: 116.8
Min nTPM: 85.4
Sample A Female 104.9
Sample B Female 116.8
Sample C Male 98.2
Sample D Male 85.4
Ventral hippocampus
nTPM: 89.1
Samples: 4

Max nTPM: 104.6
Min nTPM: 71.7
Sample A Female 104.6
Sample B Female 71.7
Sample C Male 93.9
Sample D Male 86.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 56.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.2
Samples: 4

Max nTPM: 56.3
Min nTPM: 46.7
Sample A Male 46.7
Sample B Male 49.1
Sample C Female 56.3
Sample D Female 48.7
Hippocampal formation
nTPM: 56.6
Samples: 4

Max nTPM: 61.0
Min nTPM: 49.9
Sample A Male 61.0
Sample B Male 49.9
Sample C Female 57.6
Sample D Female 57.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
69015434 Antisense, RP_050315_01_A03, Mouse strain C57BL/6J (56 days, male) 0.3

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