MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.0 nTPM
HPA Brain:72.9 nTPM
GTEx:71.0 nTPM
FANTOM5:79.5 Scaled Tags Per Million
Pig:128.1 nTPM
Mouse:55.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.6
2666 Male, age 74, left hemisphere 57.7
2411 Female, age 72, unknown 56.6
1827 Male, age 72, unknown 54.9
2219 Male, age 76, both hemispheres 53.9
1870 Female, age 42, unknown 52.8
2586 Male, age 75, left hemisphere 50.6
1830 Male, age 51, unknown 50.1
1833 Male, age 53, unknown 49.1
2828 Female, age 72, unknown 48.5
2019 Male, age 18, unknown 42.4
Dorsal raphe nucleus
nTPM: 52.0
2750 Male, age 76, both hemispheres 59.3
2047 Male, age 72, unknown 56.9
2298 Female, age 72, unknown 52.2
1828 Male, age 53, unknown 48.9
2016 Female, age 72, unknown 42.5
Inferior colliculus
nTPM: 42.3
2849 Male, age 72, unknown 47.1
2097 Female, age 72, unknown 41.7
1848 Female, age 42, unknown 41.1
1890 Male, age 53, unknown 39.2
Median raphe nucleus
nTPM: 72.9
2220 Male, age 76, midline 72.9
Periaquaductal grey, anterior
nTPM: 48.6
1795 Male, age 51, unknown 49.2
1947 Male, age 18, unknown 48.5
2502 Female, age 75, unknown 48.1
Periaquaductal grey, dorsal
nTPM: 47.4
1840 Male, age 53, unknown 52.0
2850 Male, age 76, both hemispheres 46.9
2464 Female, age 72, unknown 45.9
1831 Male, age 72, unknown 44.8
Periaquaductal grey, lateral
nTPM: 42.5
2053 Male, age 18, unknown 48.7
2140 Male, age 76, both hemispheres 42.7
2272 Male, age 74, both hemispheres 36.1
Pretectal area
nTPM: 46.5
2825 Male, age 18, unknown 56.6
1815 Male, age 53, unknown 50.9
1816 Male, age 51, unknown 50.9
1817 Female, age 42, unknown 48.9
2224 Female, age 72, unknown 48.6
2407 Male, age 75, both hemispheres 47.6
1944 Female, age 72, unknown 46.6
2007 Male, age 72, unknown 45.1
2667 Female, age 75, unknown 40.4
2316 Male, age 76, right hemisphere 38.5
2273 Male, age 74, both hemispheres 37.0
Red nucleus
nTPM: 49.7
2588 Male, age 74, left hemisphere 57.9
2584 Male, age 75, left hemisphere 53.8
1821 Female, age 72, unknown 53.4
2503 Female, age 72, unknown 53.3
1865 Male, age 51, unknown 51.3
2725 Female, age 75, unknown 50.5
1904 Male, age 53, unknown 50.3
1954 Female, age 42, unknown 50.1
2823 Male, age 76, right hemisphere 47.0
2227 Male, age 72, unknown 45.5
2769 Male, age 72, unknown 44.6
2785 Male, age 18, unknown 38.2
Substantia nigra
nTPM: 55.8
1916 Female, age 42, unknown 69.3
2241 Male, age 72, unknown 65.7
1851 Male, age 51, unknown 61.0
2699 Male, age 18, unknown 58.6
1941 Male, age 53, unknown 52.6
2409 Female, age 72, unknown 52.6
2665 Male, age 74, both hemispheres 51.7
1889 Female, age 72, unknown 51.2
2583 Male, age 75, right hemisphere 49.9
2590 Female, age 75, unknown 45.5
Superior colliculus
nTPM: 45.9
2668 Female, age 75, unknown 62.3
1796 Male, age 53, unknown 49.9
2587 Male, age 74, left hemisphere 49.0
2664 Male, age 75, both hemispheres 48.3
2261 Male, age 18, unknown 47.7
1839 Male, age 51, unknown 42.9
2087 Female, age 72, unknown 41.8
1895 Male, age 76, right hemisphere 39.5
1913 Female, age 42, unknown 39.3
1995 Male, age 72, unknown 37.8
Ventral tegmental area
nTPM: 62.6
2223 Female, age 72, unknown 83.0
2218 Male, age 76, both hemispheres 62.4
2410 Female, age 72, unknown 61.9
1915 Female, age 42, unknown 58.4
2021 Male, age 53, unknown 57.1
1942 Male, age 51, unknown 52.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.0
Samples: 139

Max nTPM: 129.5
Min nTPM: 34.5
Std nTPM: 15.7
Median nTPM: 70.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 129.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 108.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 107.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 106.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 103.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 102.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 101.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 100.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 99.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 98.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 96.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.5
FF:10158-103A5 76 years, female 79.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 128.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 121.3
Samples: 4

Max nTPM: 164.0
Min nTPM: 82.1
Sample A Female 164.0
Sample B Female 97.1
Sample C Male 141.8
Sample D Male 82.1
Midbrain
nTPM: 128.1
Samples: 4

Max nTPM: 168.6
Min nTPM: 111.0
Sample A Female 168.6
Sample B Female 115.3
Sample C Male 111.0
Sample D Male 117.5
Periaqueductal gray
nTPM: 99.2
Samples: 3

Max nTPM: 113.7
Min nTPM: 91.2
Sample B Female 92.8
Sample C Male 113.7
Sample D Male 91.2
Superior colliculi
nTPM: 104.6
Samples: 4

Max nTPM: 126.1
Min nTPM: 69.4
Sample A Female 126.1
Sample B Female 69.4
Sample C Male 114.3
Sample D Male 108.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 56.2
Min nTPM: 53.3
Sample A Male 56.2
Sample B Male 53.3
Sample C Female 55.6
Sample D Female 55.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69015434 Antisense, RP_050315_01_A03, Mouse strain C57BL/6J (56 days, male) 0.3

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