MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.8 nTPM
HPA Brain:46.0 nTPM
GTEx:33.8 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:14.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.2
2586 Male, age 75, left hemisphere 67.7
2019 Male, age 18, unknown 52.8
2828 Female, age 72, unknown 43.9
1827 Male, age 72, unknown 40.5
2666 Male, age 74, left hemisphere 38.9
2411 Female, age 72, unknown 31.3
1830 Male, age 51, unknown 30.2
1870 Female, age 42, unknown 29.8
2219 Male, age 76, both hemispheres 29.3
1833 Male, age 53, unknown 27.9
Dorsal raphe nucleus
nTPM: 34.0
2298 Female, age 72, unknown 38.7
2047 Male, age 72, unknown 34.5
1828 Male, age 53, unknown 34.0
2750 Male, age 76, both hemispheres 31.8
2016 Female, age 72, unknown 31.2
Inferior colliculus
nTPM: 29.3
2097 Female, age 72, unknown 31.0
1890 Male, age 53, unknown 30.8
1848 Female, age 42, unknown 28.0
2849 Male, age 72, unknown 27.3
Median raphe nucleus
nTPM: 31.3
2220 Male, age 76, midline 31.3
Periaquaductal grey, anterior
nTPM: 44.9
1795 Male, age 51, unknown 50.5
2502 Female, age 75, unknown 43.0
1947 Male, age 18, unknown 41.1
Periaquaductal grey, dorsal
nTPM: 32.0
2850 Male, age 76, both hemispheres 35.2
1840 Male, age 53, unknown 32.0
2464 Female, age 72, unknown 30.5
1831 Male, age 72, unknown 30.2
Periaquaductal grey, lateral
nTPM: 32.7
2140 Male, age 76, both hemispheres 40.7
2272 Male, age 74, both hemispheres 29.8
2053 Male, age 18, unknown 27.6
Pretectal area
nTPM: 46.0
2007 Male, age 72, unknown 70.8
1816 Male, age 51, unknown 60.1
1817 Female, age 42, unknown 59.0
1944 Female, age 72, unknown 55.8
1815 Male, age 53, unknown 50.9
2667 Female, age 75, unknown 42.7
2407 Male, age 75, both hemispheres 40.0
2316 Male, age 76, right hemisphere 33.8
2224 Female, age 72, unknown 32.7
2825 Male, age 18, unknown 30.5
2273 Male, age 74, both hemispheres 29.7
Red nucleus
nTPM: 33.5
2785 Male, age 18, unknown 54.4
2584 Male, age 75, left hemisphere 45.5
2588 Male, age 74, left hemisphere 36.0
2725 Female, age 75, unknown 32.4
2227 Male, age 72, unknown 32.2
2503 Female, age 72, unknown 31.2
2823 Male, age 76, right hemisphere 30.9
2769 Male, age 72, unknown 30.5
1904 Male, age 53, unknown 28.9
1821 Female, age 72, unknown 27.3
1954 Female, age 42, unknown 27.3
1865 Male, age 51, unknown 25.7
Substantia nigra
nTPM: 41.4
2665 Male, age 74, both hemispheres 53.4
1941 Male, age 53, unknown 48.9
1889 Female, age 72, unknown 46.5
1851 Male, age 51, unknown 46.0
2583 Male, age 75, right hemisphere 44.7
1916 Female, age 42, unknown 43.3
2590 Female, age 75, unknown 36.0
2241 Male, age 72, unknown 33.2
2409 Female, age 72, unknown 32.7
2699 Male, age 18, unknown 29.3
Superior colliculus
nTPM: 38.7
2664 Male, age 75, both hemispheres 58.2
2087 Female, age 72, unknown 49.2
2668 Female, age 75, unknown 46.1
1796 Male, age 53, unknown 41.5
2261 Male, age 18, unknown 41.0
1995 Male, age 72, unknown 32.3
1913 Female, age 42, unknown 31.1
1839 Male, age 51, unknown 30.6
2587 Male, age 74, left hemisphere 28.7
1895 Male, age 76, right hemisphere 28.2
Ventral tegmental area
nTPM: 34.8
2410 Female, age 72, unknown 39.4
1942 Male, age 51, unknown 38.4
1915 Female, age 42, unknown 37.9
2218 Male, age 76, both hemispheres 35.2
2021 Male, age 53, unknown 32.5
2223 Female, age 72, unknown 25.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.8
Samples: 139

Max nTPM: 71.7
Min nTPM: 14.2
Std nTPM: 9.4
Median nTPM: 32.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 71.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 55.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 53.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 53.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 50.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 50.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 49.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 49.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 48.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 47.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.1
FF:10158-103A5 76 years, female 26.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 25.0
Min nTPM: 15.7
Sample A Female 25.0
Sample B Female 20.6
Sample C Male 24.1
Sample D Male 15.7
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 25.3
Min nTPM: 16.1
Sample A Female 16.1
Sample B Female 19.6
Sample C Male 25.3
Sample D Male 21.2
Periaqueductal gray
nTPM: 17.2
Samples: 3

Max nTPM: 18.8
Min nTPM: 15.2
Sample B Female 17.5
Sample C Male 18.8
Sample D Male 15.2
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 25.0
Min nTPM: 20.9
Sample A Female 24.2
Sample B Female 21.4
Sample C Male 25.0
Sample D Male 20.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.3
Sample A Male 15.6
Sample B Male 13.9
Sample C Female 13.3
Sample D Female 15.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70927829 Antisense, RP_050725_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
413790 Antisense, RP_040809_01_D12, Mouse strain C57BL/6J (56 days, male) 0.0

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