MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.1 nTPM
HPA Brain:120.0 nTPM
GTEx:93.1 nTPM
FANTOM5:163.1 Scaled Tags Per Million
Pig:137.9 nTPM
Mouse:253.0 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 120.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.6
2586 Male, age 75, left hemisphere 150.4
2666 Male, age 74, left hemisphere 109.8
1827 Male, age 72, unknown 103.3
2019 Male, age 18, unknown 96.4
1870 Female, age 42, unknown 93.7
2411 Female, age 72, unknown 91.0
2828 Female, age 72, unknown 89.2
1833 Male, age 53, unknown 84.7
2219 Male, age 76, both hemispheres 84.7
1830 Male, age 51, unknown 82.9
Dorsal raphe nucleus
nTPM: 95.6
2298 Female, age 72, unknown 103.0
2047 Male, age 72, unknown 101.6
1828 Male, age 53, unknown 96.7
2750 Male, age 76, both hemispheres 93.0
2016 Female, age 72, unknown 83.9
Inferior colliculus
nTPM: 95.5
2097 Female, age 72, unknown 111.3
1890 Male, age 53, unknown 101.8
1848 Female, age 42, unknown 88.2
2849 Male, age 72, unknown 80.6
Median raphe nucleus
nTPM: 106.9
2220 Male, age 76, midline 106.9
Periaquaductal grey, anterior
nTPM: 108.1
2502 Female, age 75, unknown 114.4
1947 Male, age 18, unknown 105.2
1795 Male, age 51, unknown 104.7
Periaquaductal grey, dorsal
nTPM: 87.8
1840 Male, age 53, unknown 96.1
1831 Male, age 72, unknown 87.7
2850 Male, age 76, both hemispheres 84.0
2464 Female, age 72, unknown 83.5
Periaquaductal grey, lateral
nTPM: 73.3
2053 Male, age 18, unknown 87.4
2140 Male, age 76, both hemispheres 68.6
2272 Male, age 74, both hemispheres 63.8
Pretectal area
nTPM: 108.2
1816 Male, age 51, unknown 152.2
1944 Female, age 72, unknown 147.0
2007 Male, age 72, unknown 133.1
1817 Female, age 42, unknown 127.0
1815 Male, age 53, unknown 116.8
2667 Female, age 75, unknown 95.1
2224 Female, age 72, unknown 93.9
2407 Male, age 75, both hemispheres 90.5
2825 Male, age 18, unknown 87.9
2316 Male, age 76, right hemisphere 74.4
2273 Male, age 74, both hemispheres 72.0
Red nucleus
nTPM: 89.5
2584 Male, age 75, left hemisphere 123.1
2588 Male, age 74, left hemisphere 98.4
1821 Female, age 72, unknown 97.3
2725 Female, age 75, unknown 97.3
2785 Male, age 18, unknown 91.8
2503 Female, age 72, unknown 88.6
1954 Female, age 42, unknown 86.5
1904 Male, age 53, unknown 81.4
2769 Male, age 72, unknown 80.8
2227 Male, age 72, unknown 80.4
1865 Male, age 51, unknown 76.2
2823 Male, age 76, right hemisphere 72.1
Substantia nigra
nTPM: 120.0
2241 Male, age 72, unknown 147.3
1889 Female, age 72, unknown 130.6
2583 Male, age 75, right hemisphere 129.8
1916 Female, age 42, unknown 125.6
1851 Male, age 51, unknown 125.1
2665 Male, age 74, both hemispheres 121.0
1941 Male, age 53, unknown 118.7
2409 Female, age 72, unknown 106.3
2699 Male, age 18, unknown 103.4
2590 Female, age 75, unknown 92.6
Superior colliculus
nTPM: 102.4
2664 Male, age 75, both hemispheres 133.8
2087 Female, age 72, unknown 131.0
2668 Female, age 75, unknown 122.4
2261 Male, age 18, unknown 114.6
1796 Male, age 53, unknown 102.9
1839 Male, age 51, unknown 90.2
2587 Male, age 74, left hemisphere 85.9
1913 Female, age 42, unknown 84.4
1995 Male, age 72, unknown 80.1
1895 Male, age 76, right hemisphere 78.8
Ventral tegmental area
nTPM: 100.8
1915 Female, age 42, unknown 108.3
2410 Female, age 72, unknown 103.6
1942 Male, age 51, unknown 103.2
2218 Male, age 76, both hemispheres 101.4
2223 Female, age 72, unknown 95.8
2021 Male, age 53, unknown 92.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.1
Samples: 139

Max nTPM: 218.4
Min nTPM: 55.7
Std nTPM: 23.9
Median nTPM: 90.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 218.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 162.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 157.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 155.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 155.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 143.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 138.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 135.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 133.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 133.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 128.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 163.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.1
FF:10158-103A5 76 years, female 163.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 137.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 120.3
Samples: 4

Max nTPM: 144.9
Min nTPM: 76.1
Sample A Female 144.9
Sample B Female 118.5
Sample C Male 141.6
Sample D Male 76.1
Midbrain
nTPM: 137.9
Samples: 4

Max nTPM: 190.5
Min nTPM: 94.2
Sample A Female 94.2
Sample B Female 117.8
Sample C Male 190.5
Sample D Male 148.9
Periaqueductal gray
nTPM: 100.5
Samples: 3

Max nTPM: 107.5
Min nTPM: 91.8
Sample B Female 102.2
Sample C Male 107.5
Sample D Male 91.8
Superior colliculi
nTPM: 136.4
Samples: 4

Max nTPM: 158.3
Min nTPM: 99.4
Sample A Female 151.1
Sample B Female 99.4
Sample C Male 158.3
Sample D Male 136.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 253.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 253.0
Samples: 4

Max nTPM: 267.4
Min nTPM: 238.2
Sample A Male 260.5
Sample B Male 267.4
Sample C Female 245.9
Sample D Female 238.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
1276 Antisense, RP_Baylor_103167, Mouse strain C57BL/6J (56 days, male) 4.4

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