MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:63.2 nTPM
GTEx:9.6 nTPM
FANTOM5:45.8 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:22.0 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.3
2019 Male, age 18, unknown 61.9
1870 Female, age 42, unknown 58.1
2586 Male, age 75, left hemisphere 57.5
2828 Female, age 72, unknown 55.9
1830 Male, age 51, unknown 55.8
2666 Male, age 74, left hemisphere 52.7
1827 Male, age 72, unknown 50.4
1833 Male, age 53, unknown 47.6
2411 Female, age 72, unknown 43.8
2219 Male, age 76, both hemispheres 39.1
Dorsal raphe nucleus
nTPM: 54.8
2016 Female, age 72, unknown 63.7
1828 Male, age 53, unknown 61.9
2047 Male, age 72, unknown 54.8
2750 Male, age 76, both hemispheres 47.4
2298 Female, age 72, unknown 46.2
Inferior colliculus
nTPM: 63.2
1890 Male, age 53, unknown 72.5
2097 Female, age 72, unknown 62.4
1848 Female, age 42, unknown 60.1
2849 Male, age 72, unknown 57.7
Median raphe nucleus
nTPM: 45.1
2220 Male, age 76, midline 45.1
Periaquaductal grey, anterior
nTPM: 50.4
1947 Male, age 18, unknown 51.3
1795 Male, age 51, unknown 50.0
2502 Female, age 75, unknown 49.8
Periaquaductal grey, dorsal
nTPM: 59.0
2850 Male, age 76, both hemispheres 71.7
1831 Male, age 72, unknown 59.6
1840 Male, age 53, unknown 57.3
2464 Female, age 72, unknown 47.5
Periaquaductal grey, lateral
nTPM: 56.7
2140 Male, age 76, both hemispheres 68.8
2053 Male, age 18, unknown 53.6
2272 Male, age 74, both hemispheres 47.6
Pretectal area
nTPM: 52.5
2667 Female, age 75, unknown 58.2
1817 Female, age 42, unknown 55.8
2825 Male, age 18, unknown 54.2
2007 Male, age 72, unknown 53.9
2273 Male, age 74, both hemispheres 53.8
2407 Male, age 75, both hemispheres 53.2
1944 Female, age 72, unknown 51.9
2316 Male, age 76, right hemisphere 51.8
2224 Female, age 72, unknown 49.5
1815 Male, age 53, unknown 49.0
1816 Male, age 51, unknown 46.0
Red nucleus
nTPM: 58.4
1954 Female, age 42, unknown 72.5
1865 Male, age 51, unknown 63.6
2769 Male, age 72, unknown 61.5
2227 Male, age 72, unknown 61.4
1821 Female, age 72, unknown 59.3
2823 Male, age 76, right hemisphere 58.0
2503 Female, age 72, unknown 57.0
2785 Male, age 18, unknown 55.7
1904 Male, age 53, unknown 55.4
2588 Male, age 74, left hemisphere 55.2
2725 Female, age 75, unknown 54.4
2584 Male, age 75, left hemisphere 47.0
Substantia nigra
nTPM: 49.5
2665 Male, age 74, both hemispheres 54.0
2583 Male, age 75, right hemisphere 53.2
2409 Female, age 72, unknown 51.6
2699 Male, age 18, unknown 50.7
1889 Female, age 72, unknown 50.6
1941 Male, age 53, unknown 50.4
1916 Female, age 42, unknown 48.7
1851 Male, age 51, unknown 46.9
2590 Female, age 75, unknown 45.7
2241 Male, age 72, unknown 43.5
Superior colliculus
nTPM: 49.9
2587 Male, age 74, left hemisphere 54.5
1995 Male, age 72, unknown 53.6
2664 Male, age 75, both hemispheres 52.8
1839 Male, age 51, unknown 52.7
2668 Female, age 75, unknown 52.2
1913 Female, age 42, unknown 50.7
1895 Male, age 76, right hemisphere 50.4
2087 Female, age 72, unknown 48.2
1796 Male, age 53, unknown 42.2
2261 Male, age 18, unknown 42.0
Ventral tegmental area
nTPM: 48.2
2021 Male, age 53, unknown 52.7
2223 Female, age 72, unknown 51.6
2410 Female, age 72, unknown 47.9
1915 Female, age 42, unknown 47.8
1942 Male, age 51, unknown 46.4
2218 Male, age 76, both hemispheres 42.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.6
Samples: 139

Max nTPM: 16.9
Min nTPM: 5.1
Std nTPM: 2.3
Median nTPM: 9.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 16.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 14.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 14.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 14.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 14.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 13.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 13.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 13.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 13.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 13.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.8
FF:10158-103A5 76 years, female 45.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.2
Samples: 4

Max nTPM: 23.6
Min nTPM: 13.7
Sample A Female 21.5
Sample B Female 17.9
Sample C Male 23.6
Sample D Male 13.7
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 32.7
Min nTPM: 13.5
Sample A Female 19.8
Sample B Female 17.0
Sample C Male 13.5
Sample D Male 32.7
Periaqueductal gray
nTPM: 13.7
Samples: 3

Max nTPM: 14.3
Min nTPM: 13.4
Sample B Female 13.4
Sample C Male 14.3
Sample D Male 13.4
Superior colliculi
nTPM: 20.8
Samples: 4

Max nTPM: 28.3
Min nTPM: 14.3
Sample A Female 28.3
Sample B Female 25.0
Sample C Male 14.3
Sample D Male 15.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 25.2
Min nTPM: 20.0
Sample A Male 20.0
Sample B Male 21.9
Sample C Female 25.2
Sample D Female 20.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
71249739 Antisense, RP_050414_03_H02, Mouse strain C57BL/6J (56 days, male) 3.4
69443280 Antisense, RP_050414_03_H02, Mouse strain C57BL/6J (56 days, male) 3.3

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