MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:919.4 nTPM
HPA Brain:222.6 nTPM
GTEx:919.4 nTPM
FANTOM5:277.0 Scaled Tags Per Million
Pig:73.2 nTPM
Mouse:258.8 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 222.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 194.7
2666 Male, age 74, left hemisphere 241.4
2411 Female, age 72, unknown 209.2
1870 Female, age 42, unknown 204.9
2828 Female, age 72, unknown 194.2
2019 Male, age 18, unknown 194.0
1827 Male, age 72, unknown 191.2
1833 Male, age 53, unknown 189.1
1830 Male, age 51, unknown 182.3
2586 Male, age 75, left hemisphere 174.1
2219 Male, age 76, both hemispheres 166.4
Dorsal raphe nucleus
nTPM: 195.4
2298 Female, age 72, unknown 218.1
1828 Male, age 53, unknown 201.9
2016 Female, age 72, unknown 193.2
2750 Male, age 76, both hemispheres 186.3
2047 Male, age 72, unknown 177.4
Inferior colliculus
nTPM: 190.2
2849 Male, age 72, unknown 197.8
1890 Male, age 53, unknown 193.3
2097 Female, age 72, unknown 191.5
1848 Female, age 42, unknown 178.0
Median raphe nucleus
nTPM: 193.6
2220 Male, age 76, midline 193.6
Periaquaductal grey, anterior
nTPM: 202.4
2502 Female, age 75, unknown 218.5
1947 Male, age 18, unknown 198.8
1795 Male, age 51, unknown 189.8
Periaquaductal grey, dorsal
nTPM: 199.2
1840 Male, age 53, unknown 232.6
2850 Male, age 76, both hemispheres 207.4
2464 Female, age 72, unknown 179.1
1831 Male, age 72, unknown 177.9
Periaquaductal grey, lateral
nTPM: 187.5
2140 Male, age 76, both hemispheres 202.6
2053 Male, age 18, unknown 184.9
2272 Male, age 74, both hemispheres 175.1
Pretectal area
nTPM: 189.9
1817 Female, age 42, unknown 206.7
2825 Male, age 18, unknown 204.0
1815 Male, age 53, unknown 198.2
2007 Male, age 72, unknown 196.5
1944 Female, age 72, unknown 196.1
2224 Female, age 72, unknown 194.8
1816 Male, age 51, unknown 189.2
2273 Male, age 74, both hemispheres 182.8
2316 Male, age 76, right hemisphere 181.3
2667 Female, age 75, unknown 171.1
2407 Male, age 75, both hemispheres 168.7
Red nucleus
nTPM: 216.4
2503 Female, age 72, unknown 268.7
2725 Female, age 75, unknown 253.6
1865 Male, age 51, unknown 232.5
2588 Male, age 74, left hemisphere 227.6
1821 Female, age 72, unknown 221.5
1904 Male, age 53, unknown 216.8
2227 Male, age 72, unknown 209.9
2769 Male, age 72, unknown 208.2
1954 Female, age 42, unknown 202.3
2584 Male, age 75, left hemisphere 194.5
2785 Male, age 18, unknown 194.2
2823 Male, age 76, right hemisphere 166.7
Substantia nigra
nTPM: 222.6
2409 Female, age 72, unknown 264.5
2241 Male, age 72, unknown 264.4
1851 Male, age 51, unknown 261.6
1916 Female, age 42, unknown 243.2
2665 Male, age 74, both hemispheres 235.7
2699 Male, age 18, unknown 232.5
1889 Female, age 72, unknown 195.4
2590 Female, age 75, unknown 188.3
1941 Male, age 53, unknown 180.2
2583 Male, age 75, right hemisphere 160.5
Superior colliculus
nTPM: 194.0
2587 Male, age 74, left hemisphere 253.1
1913 Female, age 42, unknown 206.2
2668 Female, age 75, unknown 195.0
1995 Male, age 72, unknown 194.0
2261 Male, age 18, unknown 192.3
1796 Male, age 53, unknown 190.5
2087 Female, age 72, unknown 182.4
1839 Male, age 51, unknown 181.9
1895 Male, age 76, right hemisphere 174.4
2664 Male, age 75, both hemispheres 170.4
Ventral tegmental area
nTPM: 208.1
1915 Female, age 42, unknown 238.7
2223 Female, age 72, unknown 226.0
2410 Female, age 72, unknown 205.2
2021 Male, age 53, unknown 200.5
1942 Male, age 51, unknown 193.0
2218 Male, age 76, both hemispheres 185.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 919.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 919.4
Samples: 139

Max nTPM: 3344.1
Min nTPM: 390.0
Std nTPM: 393.7
Median nTPM: 813.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3344.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2435.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2188.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2049.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1750.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1643.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1568.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1564.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1551.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1517.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1399.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 277.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 277.0
FF:10158-103A5 76 years, female 277.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.3
Samples: 4

Max nTPM: 93.7
Min nTPM: 41.7
Sample A Female 93.7
Sample B Female 58.6
Sample C Male 63.0
Sample D Male 41.7
Midbrain
nTPM: 66.4
Samples: 4

Max nTPM: 78.8
Min nTPM: 58.7
Sample A Female 78.8
Sample B Female 64.1
Sample C Male 63.9
Sample D Male 58.7
Periaqueductal gray
nTPM: 49.5
Samples: 3

Max nTPM: 52.7
Min nTPM: 43.8
Sample B Female 52.0
Sample C Male 52.7
Sample D Male 43.8
Superior colliculi
nTPM: 73.2
Samples: 4

Max nTPM: 85.7
Min nTPM: 56.3
Sample A Female 85.7
Sample B Female 69.8
Sample C Male 80.8
Sample D Male 56.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 258.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 258.8
Samples: 4

Max nTPM: 293.5
Min nTPM: 234.3
Sample A Male 293.5
Sample B Male 248.9
Sample C Female 234.3
Sample D Female 258.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
68498271 Antisense, RP_050113_01_F04, Mouse strain C57BL/6J (56 days, male) 4.8

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