HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:952.7 nTPM
HPA Brain:1181.3 nTPM
GTEx:952.7 nTPM
FANTOM5:2265.7 Scaled Tags Per Million
Pig:675.8 nTPM
Mouse:1090.5 nTPM
Allen mouse:25.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039247Antibody HPA043684Antibody HPA063394Antibody CAB011513
Glial cells MediumNot detectedNot detectedNot detected
Neuronal cells HighHighMediumMedium









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 1181.3
Sample id Sample description nTPM
Hippocampus
nTPM: 697.1
1898 Male, age 80, left hemisphere 1083.0
2621 Female, age 67, right hemisphere 797.9
2148 Female, age 91, left hemisphere 728.5
2529 Female, age 94, left hemisphere 571.2
1855 Male, age 76, left hemisphere 537.5
1911 Female, age 85, right hemisphere 464.6
Dentate gyrus
nTPM: 804.4
2530 Female, age 94, left hemisphere 1389.6
1927 Female, age 91, both hemispheres 855.5
2246 Female, age 85, both hemispheres 729.2
2010 Male, age 76, both hemispheres 642.8
2528 Male, age 74, both hemispheres 639.4
2531 Female, age 67, both hemispheres 570.1
Entorhinal gyrus
nTPM: 1020.3
2764 Male, age 80, right hemisphere 1252.9
2613 Female, age 94, left hemisphere 1225.8
1938 Female, age 85, left hemisphere 1134.5
2686 Male, age 75, right hemisphere 990.4
1787 Male, age 76, left hemisphere 924.0
2117 Female, age 91, right hemisphere 593.9
Hippocampus, CA1
nTPM: 709.4
2749 Male, age 80, left hemisphere 1091.2
1873 Female, age 85, both hemispheres 825.7
2527 Male, age 74, both hemispheres 751.6
2045 Male, age 76, both hemispheres 466.7
2082 Female, age 91, right hemisphere 411.7
Hippocampus, CA2
nTPM: 754.4
1963 Male, age 80, left hemisphere 1167.0
2437 Female, age 94, left hemisphere 921.8
1892 Male, age 76, both hemispheres 834.7
2249 Male, age 74, both hemispheres 600.8
1940 Female, age 85, left hemisphere 550.5
2113 Female, age 91, right hemisphere 451.9
Hippocampus, CA3
nTPM: 658.4
2861 Female, age 67, both hemispheres 739.0
1891 Female, age 85, both hemispheres 686.6
2436 Male, age 74, both hemispheres 679.9
2137 Male, age 80, left hemisphere 677.4
1867 Male, age 76, both hemispheres 619.2
2620 Female, age 94, left hemisphere 548.0
Parahippocampal cortex
nTPM: 963.7
1850 Male, age 80, both hemispheres 1243.2
2532 Female, age 72, left hemisphere 1126.2
1933 Female, age 85, both hemispheres 1053.0
2245 Female, age 91, both hemispheres 958.4
2692 Male, age 74, both hemispheres 952.5
2693 Female, age 94, both hemispheres 935.0
2622 Female, age 67, right hemisphere 933.9
2250 Female, age 67, right hemisphere 891.5
1990 Female, age 91, right hemisphere 885.6
2018 Male, age 76, both hemispheres 658.2
Perirhinal gyrus
nTPM: 1181.3
1847 Female, age 91, left hemisphere 1320.8
1841 Female, age 85, right hemisphere 1233.9
1794 Male, age 80, right hemisphere 1213.9
2848 Male, age 76, right hemisphere 1116.4
2521 Female, age 94, right hemisphere 1021.5
Subiculum
nTPM: 738.4
1977 Female, age 85, both hemispheres 1047.4
2438 Female, age 94, left hemisphere 814.3
2619 Male, age 74, both hemispheres 791.8
1901 Male, age 80, both hemispheres 761.1
2042 Male, age 76, both hemispheres 551.6
2729 Female, age 91, right hemisphere 464.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 952.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 952.7
Samples: 197

Max nTPM: 2678.5
Min nTPM: 247.5
Std nTPM: 504.7
Median nTPM: 799.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 2678.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 2587.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 2215.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 2133.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2097.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 2063.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2057.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 2015.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1991.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1937.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1919.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 2265.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 2265.7
FF:10169-103B7 60 years, female 3376.4
FF:10153-102I9 76 years, female 1155.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 675.8
Pig sample Sample description nTPM
Subiculum
nTPM: 633.7
Samples: 4

Max nTPM: 708.6
Min nTPM: 483.2
Sample A Female 708.6
Sample B Female 644.9
Sample C Male 698.1
Sample D Male 483.2
Dorsal hippocampus
nTPM: 655.3
Samples: 4

Max nTPM: 777.9
Min nTPM: 422.0
Sample A Female 777.9
Sample B Female 750.0
Sample C Male 671.1
Sample D Male 422.0
Entorhinal cortex
nTPM: 675.8
Samples: 4

Max nTPM: 852.2
Min nTPM: 502.1
Sample A Female 625.8
Sample B Female 723.0
Sample C Male 852.2
Sample D Male 502.1
Ventral hippocampus
nTPM: 627.6
Samples: 4

Max nTPM: 941.6
Min nTPM: 483.3
Sample A Female 578.0
Sample B Female 483.3
Sample C Male 941.6
Sample D Male 507.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1090.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1090.6
Samples: 4

Max nTPM: 1237.4
Min nTPM: 1013.8
Sample A Male 1013.8
Sample B Male 1044.7
Sample C Female 1066.3
Sample D Female 1237.4
Hippocampal formation
nTPM: 1005.5
Samples: 4

Max nTPM: 1065.4
Min nTPM: 938.1
Sample A Male 1065.4
Sample B Male 938.1
Sample C Female 993.6
Sample D Female 1025.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 25.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 25.7
77465048 Antisense, RP_070129_03_A07, Mouse strain C57BL/6J (56 days, male) 25.7

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