MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1014.1 nTPM
HPA Brain:1219.9 nTPM
GTEx:1014.1 nTPM
FANTOM5:1433.4 Scaled Tags Per Million
Pig:723.7 nTPM
Mouse:1349.7 nTPM
Allen mouse:24.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1219.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 823.2
2666 Male, age 74, left hemisphere 1052.6
1827 Male, age 72, unknown 1043.8
2586 Male, age 75, left hemisphere 894.7
2411 Female, age 72, unknown 882.6
2828 Female, age 72, unknown 842.7
2219 Male, age 76, both hemispheres 809.0
1870 Female, age 42, unknown 803.2
2019 Male, age 18, unknown 706.7
1833 Male, age 53, unknown 602.5
1830 Male, age 51, unknown 594.0
Dorsal raphe nucleus
nTPM: 846.4
2298 Female, age 72, unknown 1005.3
2750 Male, age 76, both hemispheres 993.3
2047 Male, age 72, unknown 895.2
1828 Male, age 53, unknown 825.1
2016 Female, age 72, unknown 512.9
Inferior colliculus
nTPM: 583.0
2097 Female, age 72, unknown 629.0
2849 Male, age 72, unknown 602.9
1848 Female, age 42, unknown 574.2
1890 Male, age 53, unknown 526.0
Median raphe nucleus
nTPM: 1219.9
2220 Male, age 76, midline 1219.9
Periaquaductal grey, anterior
nTPM: 993.1
1947 Male, age 18, unknown 1094.9
1795 Male, age 51, unknown 1075.4
2502 Female, age 75, unknown 809.1
Periaquaductal grey, dorsal
nTPM: 665.1
1840 Male, age 53, unknown 730.3
2850 Male, age 76, both hemispheres 720.2
1831 Male, age 72, unknown 605.1
2464 Female, age 72, unknown 604.8
Periaquaductal grey, lateral
nTPM: 593.6
2053 Male, age 18, unknown 691.0
2140 Male, age 76, both hemispheres 632.3
2272 Male, age 74, both hemispheres 457.5
Pretectal area
nTPM: 881.9
1816 Male, age 51, unknown 1383.6
2007 Male, age 72, unknown 1154.9
1944 Female, age 72, unknown 1147.9
1817 Female, age 42, unknown 998.0
2667 Female, age 75, unknown 906.9
1815 Male, age 53, unknown 902.6
2224 Female, age 72, unknown 794.9
2825 Male, age 18, unknown 762.4
2407 Male, age 75, both hemispheres 621.4
2316 Male, age 76, right hemisphere 532.7
2273 Male, age 74, both hemispheres 496.0
Red nucleus
nTPM: 702.7
2584 Male, age 75, left hemisphere 857.8
1821 Female, age 72, unknown 828.9
2588 Male, age 74, left hemisphere 813.3
2725 Female, age 75, unknown 788.3
2503 Female, age 72, unknown 718.6
2785 Male, age 18, unknown 673.4
1954 Female, age 42, unknown 663.4
2227 Male, age 72, unknown 650.9
2769 Male, age 72, unknown 635.2
1865 Male, age 51, unknown 626.1
1904 Male, age 53, unknown 616.2
2823 Male, age 76, right hemisphere 560.4
Substantia nigra
nTPM: 947.5
1916 Female, age 42, unknown 1338.2
1941 Male, age 53, unknown 1154.9
1851 Male, age 51, unknown 1020.6
1889 Female, age 72, unknown 965.3
2241 Male, age 72, unknown 950.4
2590 Female, age 75, unknown 920.5
2665 Male, age 74, both hemispheres 915.4
2583 Male, age 75, right hemisphere 795.6
2409 Female, age 72, unknown 728.2
2699 Male, age 18, unknown 685.8
Superior colliculus
nTPM: 743.1
1796 Male, age 53, unknown 1023.0
2261 Male, age 18, unknown 974.2
2087 Female, age 72, unknown 941.2
2664 Male, age 75, both hemispheres 741.1
2668 Female, age 75, unknown 728.3
2587 Male, age 74, left hemisphere 674.7
1913 Female, age 42, unknown 667.4
1839 Male, age 51, unknown 645.2
1895 Male, age 76, right hemisphere 581.0
1995 Male, age 72, unknown 455.3
Ventral tegmental area
nTPM: 936.7
2218 Male, age 76, both hemispheres 1134.8
1915 Female, age 42, unknown 1036.7
2410 Female, age 72, unknown 1020.9
2223 Female, age 72, unknown 884.2
1942 Male, age 51, unknown 797.1
2021 Male, age 53, unknown 746.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1014.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1014.1
Samples: 139

Max nTPM: 2996.0
Min nTPM: 261.0
Std nTPM: 425.0
Median nTPM: 954.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2996.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2573.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 2066.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1978.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1937.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1927.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1843.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1824.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1674.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1617.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1599.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1433.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1433.4
FF:10158-103A5 76 years, female 1433.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 723.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 723.7
Samples: 4

Max nTPM: 1049.4
Min nTPM: 279.3
Sample A Female 956.7
Sample B Female 609.3
Sample C Male 1049.4
Sample D Male 279.3
Midbrain
nTPM: 664.0
Samples: 4

Max nTPM: 874.1
Min nTPM: 493.0
Sample A Female 493.0
Sample B Female 748.5
Sample C Male 874.1
Sample D Male 540.4
Periaqueductal gray
nTPM: 649.2
Samples: 3

Max nTPM: 882.6
Min nTPM: 444.1
Sample B Female 621.0
Sample C Male 882.6
Sample D Male 444.1
Superior colliculi
nTPM: 628.0
Samples: 4

Max nTPM: 887.0
Min nTPM: 429.8
Sample A Female 710.8
Sample B Female 429.8
Sample C Male 887.0
Sample D Male 484.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1349.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 1349.7
Samples: 4

Max nTPM: 1384.9
Min nTPM: 1286.9
Sample A Male 1349.0
Sample B Male 1384.9
Sample C Female 1286.9
Sample D Female 1378.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.2
77465048 Antisense, RP_070129_03_A07, Mouse strain C57BL/6J (56 days, male) 24.2

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