HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:52.7 nTPM
HPA Brain:84.7 nTPM
GTEx:52.7 nTPM
FANTOM5:53.9 Scaled Tags Per Million
Pig:62.4 nTPM
Mouse:25.1 nTPM
Allen mouse:5.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044950
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 84.7
Sample id Sample description nTPM
Hippocampus
nTPM: 77.7
2529 Female, age 94, left hemisphere 94.5
1898 Male, age 80, left hemisphere 90.2
2148 Female, age 91, left hemisphere 81.5
1911 Female, age 85, right hemisphere 70.0
2621 Female, age 67, right hemisphere 68.0
1855 Male, age 76, left hemisphere 61.7
Dentate gyrus
nTPM: 69.5
2528 Male, age 74, both hemispheres 77.9
1927 Female, age 91, both hemispheres 76.9
2010 Male, age 76, both hemispheres 72.7
2530 Female, age 94, left hemisphere 72.1
2246 Female, age 85, both hemispheres 69.0
2531 Female, age 67, both hemispheres 48.1
Entorhinal gyrus
nTPM: 77.8
2117 Female, age 91, right hemisphere 98.0
1938 Female, age 85, left hemisphere 81.2
2764 Male, age 80, right hemisphere 81.0
1787 Male, age 76, left hemisphere 76.4
2613 Female, age 94, left hemisphere 66.2
2686 Male, age 75, right hemisphere 64.0
Hippocampus, CA1
nTPM: 80.6
2749 Male, age 80, left hemisphere 105.8
2527 Male, age 74, both hemispheres 97.0
1873 Female, age 85, both hemispheres 81.1
2082 Female, age 91, right hemisphere 63.9
2045 Male, age 76, both hemispheres 55.3
Hippocampus, CA2
nTPM: 79.7
2249 Male, age 74, both hemispheres 90.3
1892 Male, age 76, both hemispheres 85.4
1963 Male, age 80, left hemisphere 84.3
2437 Female, age 94, left hemisphere 75.5
2113 Female, age 91, right hemisphere 74.8
1940 Female, age 85, left hemisphere 68.0
Hippocampus, CA3
nTPM: 77.9
2436 Male, age 74, both hemispheres 109.5
2137 Male, age 80, left hemisphere 81.1
1867 Male, age 76, both hemispheres 77.8
1891 Female, age 85, both hemispheres 75.6
2620 Female, age 94, left hemisphere 71.2
2861 Female, age 67, both hemispheres 52.5
Parahippocampal cortex
nTPM: 80.1
1850 Male, age 80, both hemispheres 94.4
2245 Female, age 91, both hemispheres 87.0
2692 Male, age 74, both hemispheres 86.9
1990 Female, age 91, right hemisphere 85.4
2622 Female, age 67, right hemisphere 82.3
2250 Female, age 67, right hemisphere 80.9
1933 Female, age 85, both hemispheres 78.7
2018 Male, age 76, both hemispheres 75.1
2532 Female, age 72, left hemisphere 68.5
2693 Female, age 94, both hemispheres 61.4
Perirhinal gyrus
nTPM: 84.7
1847 Female, age 91, left hemisphere 100.5
1794 Male, age 80, right hemisphere 97.6
1841 Female, age 85, right hemisphere 83.3
2521 Female, age 94, right hemisphere 72.5
2848 Male, age 76, right hemisphere 69.3
Subiculum
nTPM: 82.0
2619 Male, age 74, both hemispheres 90.9
2729 Female, age 91, right hemisphere 87.0
2438 Female, age 94, left hemisphere 85.3
1977 Female, age 85, both hemispheres 83.2
1901 Male, age 80, both hemispheres 81.1
2042 Male, age 76, both hemispheres 64.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 52.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 52.7
Samples: 197

Max nTPM: 120.0
Min nTPM: 20.2
Std nTPM: 18.1
Median nTPM: 50.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 120.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 119.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 114.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 110.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 88.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 87.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 86.0
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 82.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 80.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 80.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 80.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 53.9
FF:10153-102I9 76 years, female 58.0
FF:10169-103B7 60 years, female 49.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 62.4
Pig sample Sample description nTPM
Subiculum
nTPM: 61.7
Samples: 4

Max nTPM: 78.2
Min nTPM: 52.9
Sample A Female 78.2
Sample B Female 60.9
Sample C Male 54.7
Sample D Male 52.9
Dorsal hippocampus
nTPM: 60.5
Samples: 4

Max nTPM: 68.3
Min nTPM: 49.9
Sample A Female 68.3
Sample B Female 58.8
Sample C Male 64.9
Sample D Male 49.9
Entorhinal cortex
nTPM: 62.5
Samples: 4

Max nTPM: 76.8
Min nTPM: 49.6
Sample A Female 59.7
Sample B Female 76.8
Sample C Male 63.7
Sample D Male 49.6
Ventral hippocampus
nTPM: 58.5
Samples: 4

Max nTPM: 67.6
Min nTPM: 49.3
Sample A Female 62.0
Sample B Female 49.3
Sample C Male 67.6
Sample D Male 55.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.1
Samples: 4

Max nTPM: 30.3
Min nTPM: 23.2
Sample A Male 23.3
Sample B Male 30.3
Sample C Female 23.6
Sample D Female 23.2
Hippocampal formation
nTPM: 24.4
Samples: 4

Max nTPM: 26.7
Min nTPM: 22.7
Sample A Male 24.5
Sample B Male 26.7
Sample C Female 23.5
Sample D Female 22.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.1
77280419 Antisense, RP_070116_01_E02, Mouse strain C57BL/6J (56 days, male) 5.8
69262300 Antisense, RP_050303_01_G06, Mouse strain C57BL/6J (56 days, male) 4.4

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