MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.6 nTPM
HPA Brain:97.0 nTPM
GTEx:74.6 nTPM
FANTOM5:36.7 Scaled Tags Per Million
Pig:88.7 nTPM
Mouse:31.3 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.1
2019 Male, age 18, unknown 98.6
2586 Male, age 75, left hemisphere 89.8
2411 Female, age 72, unknown 88.7
1827 Male, age 72, unknown 75.9
2219 Male, age 76, both hemispheres 74.0
2828 Female, age 72, unknown 71.4
1833 Male, age 53, unknown 68.0
1870 Female, age 42, unknown 67.7
2666 Male, age 74, left hemisphere 65.9
1830 Male, age 51, unknown 61.0
Dorsal raphe nucleus
nTPM: 82.7
1828 Male, age 53, unknown 94.6
2298 Female, age 72, unknown 84.0
2047 Male, age 72, unknown 83.7
2750 Male, age 76, both hemispheres 81.6
2016 Female, age 72, unknown 69.7
Inferior colliculus
nTPM: 83.7
2097 Female, age 72, unknown 102.8
1890 Male, age 53, unknown 101.1
1848 Female, age 42, unknown 73.9
2849 Male, age 72, unknown 56.8
Median raphe nucleus
nTPM: 82.8
2220 Male, age 76, midline 82.8
Periaquaductal grey, anterior
nTPM: 68.7
2502 Female, age 75, unknown 73.8
1947 Male, age 18, unknown 66.2
1795 Male, age 51, unknown 66.1
Periaquaductal grey, dorsal
nTPM: 61.7
2464 Female, age 72, unknown 68.0
1831 Male, age 72, unknown 63.5
2850 Male, age 76, both hemispheres 58.6
1840 Male, age 53, unknown 56.7
Periaquaductal grey, lateral
nTPM: 65.2
2272 Male, age 74, both hemispheres 73.3
2053 Male, age 18, unknown 67.0
2140 Male, age 76, both hemispheres 55.3
Pretectal area
nTPM: 82.9
1817 Female, age 42, unknown 110.5
1816 Male, age 51, unknown 105.7
2007 Male, age 72, unknown 103.9
2667 Female, age 75, unknown 93.0
1944 Female, age 72, unknown 90.7
1815 Male, age 53, unknown 86.6
2316 Male, age 76, right hemisphere 73.0
2273 Male, age 74, both hemispheres 71.5
2224 Female, age 72, unknown 71.1
2825 Male, age 18, unknown 56.9
2407 Male, age 75, both hemispheres 49.1
Red nucleus
nTPM: 90.0
1821 Female, age 72, unknown 131.9
2503 Female, age 72, unknown 100.7
1954 Female, age 42, unknown 98.9
1904 Male, age 53, unknown 96.8
2785 Male, age 18, unknown 92.7
2227 Male, age 72, unknown 90.8
1865 Male, age 51, unknown 90.5
2769 Male, age 72, unknown 87.9
2823 Male, age 76, right hemisphere 84.4
2588 Male, age 74, left hemisphere 81.1
2725 Female, age 75, unknown 75.6
2584 Male, age 75, left hemisphere 48.7
Substantia nigra
nTPM: 97.0
1916 Female, age 42, unknown 134.6
1851 Male, age 51, unknown 113.0
1889 Female, age 72, unknown 106.0
2241 Male, age 72, unknown 101.7
2409 Female, age 72, unknown 101.3
1941 Male, age 53, unknown 93.8
2699 Male, age 18, unknown 91.1
2665 Male, age 74, both hemispheres 82.9
2590 Female, age 75, unknown 77.0
2583 Male, age 75, right hemisphere 68.6
Superior colliculus
nTPM: 71.8
2668 Female, age 75, unknown 82.7
2087 Female, age 72, unknown 82.5
1895 Male, age 76, right hemisphere 78.1
2261 Male, age 18, unknown 76.5
2587 Male, age 74, left hemisphere 75.5
1796 Male, age 53, unknown 70.5
1995 Male, age 72, unknown 67.7
1913 Female, age 42, unknown 66.5
1839 Male, age 51, unknown 64.6
2664 Male, age 75, both hemispheres 53.1
Ventral tegmental area
nTPM: 87.0
2410 Female, age 72, unknown 113.8
1915 Female, age 42, unknown 98.0
2218 Male, age 76, both hemispheres 97.4
2223 Female, age 72, unknown 75.5
1942 Male, age 51, unknown 75.1
2021 Male, age 53, unknown 62.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.6
Samples: 139

Max nTPM: 221.7
Min nTPM: 32.3
Std nTPM: 29.1
Median nTPM: 69.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 221.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 184.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 174.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 170.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 163.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 140.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 127.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 126.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 120.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 119.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 110.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.7
FF:10158-103A5 76 years, female 36.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 88.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.5
Samples: 4

Max nTPM: 84.4
Min nTPM: 61.0
Sample A Female 84.4
Sample B Female 61.0
Sample C Male 74.9
Sample D Male 65.8
Midbrain
nTPM: 87.3
Samples: 4

Max nTPM: 102.3
Min nTPM: 77.7
Sample A Female 87.3
Sample B Female 77.7
Sample C Male 102.3
Sample D Male 81.7
Periaqueductal gray
nTPM: 66.4
Samples: 3

Max nTPM: 73.1
Min nTPM: 60.2
Sample B Female 73.1
Sample C Male 65.9
Sample D Male 60.2
Superior colliculi
nTPM: 88.7
Samples: 4

Max nTPM: 109.7
Min nTPM: 64.8
Sample A Female 93.4
Sample B Female 64.8
Sample C Male 109.7
Sample D Male 86.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.3
Samples: 4

Max nTPM: 33.9
Min nTPM: 28.7
Sample A Male 33.9
Sample B Male 30.7
Sample C Female 28.7
Sample D Female 31.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
69262300 Antisense, RP_050303_01_G06, Mouse strain C57BL/6J (56 days, male) 6.2
77280419 Antisense, RP_070116_01_E02, Mouse strain C57BL/6J (56 days, male) 6.1

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