BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:27.9 nTPM
HPA Brain:44.0 nTPM
GTEx:27.9 nTPM
FANTOM5:101.0 Scaled Tags Per Million
Pig:87.3 nTPM
Mouse:36.3 nTPM
Allen mouse:3.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA013144Antibody CAB013722
Glial cells HighMedium
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.5
2846 Female, age 79, unknown 37.5
1854 Male, age 80, left hemisphere 37.1
2481 Female, age 94, left hemisphere 36.5
1857 Female, age 85, left hemisphere 35.6
2290 Female, age 72, unknown 35.0
2288 Male, age 75, left hemisphere 34.3
1781 Male, age 74, unknown 33.9
2289 Male, age 61, right hemisphere 25.8
Globus pallidus, externus
nTPM: 44.0
2395 Male, age 75, both hemispheres 49.9
2772 Female, age 79, unknown 47.5
2567 Female, age 72, unknown 46.4
2646 Male, age 61, right hemisphere 44.1
1996 Male, age 80, right hemisphere 32.3
Globus pallidus, internus
nTPM: 42.1
2483 Female, age 94, right hemisphere 64.4
2287 Male, age 75, right hemisphere 50.9
2566 Female, age 72, unknown 41.9
1818 Male, age 74, unknown 38.7
2778 Female, age 91, both hemispheres 35.4
2111 Female, age 85, right hemisphere 32.1
2037 Male, age 80, right hemisphere 31.6
Nucleus accumbens
nTPM: 36.1
1856 Female, age 91, right hemisphere 42.2
2698 Female, age 72, unknown 39.1
2824 Male, age 61, right hemisphere 38.6
1783 Male, age 74, unknown 36.1
1806 Female, age 85, left hemisphere 34.8
2391 Female, age 94, left hemisphere 34.2
2286 Male, age 75, left hemisphere 33.8
2732 Male, age 80, right hemisphere 30.0
Nucleus basalis of Meynert
nTPM: 42.1
2569 Male, age 61, both hemispheres 50.9
2484 Female, age 94, left hemisphere 40.7
2821 Male, age 75, both hemispheres 38.4
2393 Male, age 80, right hemisphere 38.2
Nucleus of the diagonal band
nTPM: 39.7
2775 Male, age 80, right hemisphere 47.9
1812 Female, age 91, both hemispheres 44.2
2195 Female, age 85, both hemispheres 36.9
2029 Male, age 61, right hemisphere 36.2
1979 Male, age 74, unknown 33.5
Putamen
nTPM: 38.3
2647 Male, age 75, left hemisphere 48.6
2466 Female, age 79, unknown 39.5
1838 Male, age 80, right hemisphere 37.0
1829 Male, age 74, unknown 36.7
2482 Female, age 94, left hemisphere 36.6
1937 Female, age 91, right hemisphere 35.8
2489 Female, age 72, unknown 33.9
Septal nuclei
nTPM: 35.1
2031 Female, age 72, unknown 40.9
1960 Male, age 74, unknown 39.2
2009 Female, age 91, both hemispheres 36.6
2394 Male, age 61, left hemisphere 34.6
2629 Female, age 94, right hemisphere 32.1
2199 Male, age 80, right hemisphere 32.0
2059 Female, age 85, both hemispheres 30.3
Stria terminalis, bed nucleus
nTPM: 36.0
1974 Female, age 91, both hemispheres 43.5
2201 Male, age 74, unknown 35.2
2486 Female, age 94, both hemispheres 29.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.3
Samples: 246

Max nTPM: 35.9
Min nTPM: 15.2
Std nTPM: 3.5
Median nTPM: 23.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 35.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 35.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 34.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 33.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 33.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 33.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 32.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 31.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 31.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 31.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 31.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.9
Samples: 246

Max nTPM: 42.5
Min nTPM: 13.2
Std nTPM: 4.4
Median nTPM: 27.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 42.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 38.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 37.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 37.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 36.5
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 36.3
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 35.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 35.6
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 35.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 35.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 35.2
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Brain - Putamen (basal ganglia)
Average nTPM: 26.0
Samples: 205

Max nTPM: 39.9
Min nTPM: 17.1
Std nTPM: 3.5
Median nTPM: 25.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 39.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 35.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 34.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 34.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 33.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 33.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 33.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 32.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 32.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 32.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 32.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 93.2
FF:10164-103B2 76 years, female 93.2
Nucleus accumbens
Scaled Tags Per Million: 101.0
FF:10037-101F1 23-56 years, mixed 101.0
Putamen
Scaled Tags Per Million: 92.0
FF:10176-103C5 60 years, female 92.0
Globus pallidus
Scaled Tags Per Million: 70.2
FF:10175-103C4 60 years, female 73.7
FF:10161-103A8 76 years, female 66.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 87.3
Pig sample Sample description nTPM
Caudate
nTPM: 70.0
Samples: 4

Max nTPM: 78.8
Min nTPM: 60.1
Sample A Female 71.2
Sample B Female 69.7
Sample C Male 78.8
Sample D Male 60.1
Putamen
nTPM: 87.3
Samples: 4

Max nTPM: 96.8
Min nTPM: 68.1
Sample A Female 96.8
Sample B Female 68.1
Sample C Male 91.2
Sample D Male 93.0
Septum
nTPM: 80.1
Samples: 4

Max nTPM: 89.0
Min nTPM: 71.1
Sample A Female 89.0
Sample B Female 74.9
Sample C Male 85.4
Sample D Male 71.1
Ventral pallidum
nTPM: 81.6
Samples: 4

Max nTPM: 91.6
Min nTPM: 75.2
Sample A Female 75.2
Sample B Female 79.3
Sample C Male 91.6
Sample D Male 80.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 36.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 30.3
Samples: 4

Max nTPM: 31.4
Min nTPM: 29.1
Sample A Male 29.1
Sample B Male 30.1
Sample C Female 30.7
Sample D Female 31.4
Septum
nTPM: 36.4
Samples: 4

Max nTPM: 38.7
Min nTPM: 35.3
Sample A Male 38.7
Sample B Male 35.3
Sample C Female 36.0
Sample D Female 35.4
Ventral forebrain
nTPM: 34.9
Samples: 4

Max nTPM: 37.2
Min nTPM: 33.7
Sample A Male 34.5
Sample B Male 37.2
Sample C Female 34.2
Sample D Female 33.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
68745305 Antisense, RP_050210_01_F07, Mouse strain C57BL/6J (56 days, male) 4.7
71152461 Antisense, RP_050719_04_A08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 3.1
68745305 Antisense, RP_050210_01_F07, Mouse strain C57BL/6J (56 days, male) 6.1
71152461 Antisense, RP_050719_04_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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