HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:26.3 nTPM
HPA Brain:40.9 nTPM
GTEx:26.3 nTPM
FANTOM5:82.3 Scaled Tags Per Million
Pig:85.7 nTPM
Mouse:34.1 nTPM
Allen mouse:3.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013144Antibody CAB013722
Glial cells LowMedium
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Hippocampus
nTPM: 36.6
1898 Male, age 80, left hemisphere 45.6
2529 Female, age 94, left hemisphere 38.2
2621 Female, age 67, right hemisphere 36.6
2148 Female, age 91, left hemisphere 36.3
1855 Male, age 76, left hemisphere 33.4
1911 Female, age 85, right hemisphere 29.3
Dentate gyrus
nTPM: 38.4
2530 Female, age 94, left hemisphere 46.3
1927 Female, age 91, both hemispheres 42.4
2010 Male, age 76, both hemispheres 36.7
2246 Female, age 85, both hemispheres 35.4
2531 Female, age 67, both hemispheres 35.4
2528 Male, age 74, both hemispheres 34.3
Entorhinal gyrus
nTPM: 37.7
2764 Male, age 80, right hemisphere 40.1
2686 Male, age 75, right hemisphere 40.0
1938 Female, age 85, left hemisphere 39.4
1787 Male, age 76, left hemisphere 38.5
2117 Female, age 91, right hemisphere 35.0
2613 Female, age 94, left hemisphere 32.9
Hippocampus, CA1
nTPM: 40.9
2749 Male, age 80, left hemisphere 60.6
1873 Female, age 85, both hemispheres 42.4
2527 Male, age 74, both hemispheres 35.7
2045 Male, age 76, both hemispheres 33.8
2082 Female, age 91, right hemisphere 32.0
Hippocampus, CA2
nTPM: 39.4
1892 Male, age 76, both hemispheres 53.0
1963 Male, age 80, left hemisphere 50.2
2437 Female, age 94, left hemisphere 39.2
2249 Male, age 74, both hemispheres 34.2
2113 Female, age 91, right hemisphere 30.8
1940 Female, age 85, left hemisphere 28.8
Hippocampus, CA3
nTPM: 36.3
2137 Male, age 80, left hemisphere 41.8
1867 Male, age 76, both hemispheres 40.2
2861 Female, age 67, both hemispheres 39.4
1891 Female, age 85, both hemispheres 35.0
2620 Female, age 94, left hemisphere 33.5
2436 Male, age 74, both hemispheres 27.7
Parahippocampal cortex
nTPM: 34.2
1850 Male, age 80, both hemispheres 47.3
2692 Male, age 74, both hemispheres 38.1
1990 Female, age 91, right hemisphere 37.9
1933 Female, age 85, both hemispheres 35.2
2532 Female, age 72, left hemisphere 35.1
2245 Female, age 91, both hemispheres 34.7
2622 Female, age 67, right hemisphere 29.8
2693 Female, age 94, both hemispheres 28.5
2018 Male, age 76, both hemispheres 27.8
2250 Female, age 67, right hemisphere 27.5
Perirhinal gyrus
nTPM: 40.3
1794 Male, age 80, right hemisphere 48.6
1847 Female, age 91, left hemisphere 44.9
1841 Female, age 85, right hemisphere 38.5
2848 Male, age 76, right hemisphere 37.1
2521 Female, age 94, right hemisphere 32.4
Subiculum
nTPM: 35.4
2438 Female, age 94, left hemisphere 40.4
1901 Male, age 80, both hemispheres 40.2
1977 Female, age 85, both hemispheres 37.9
2729 Female, age 91, right hemisphere 34.1
2619 Male, age 74, both hemispheres 33.4
2042 Male, age 76, both hemispheres 26.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.3
Samples: 197

Max nTPM: 38.4
Min nTPM: 13.6
Std nTPM: 4.9
Median nTPM: 25.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 38.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 38.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 38.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 37.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 36.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 36.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 35.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 35.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 35.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 35.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 34.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 82.3
FF:10169-103B7 60 years, female 87.2
FF:10153-102I9 76 years, female 77.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 85.7
Pig sample Sample description nTPM
Subiculum
nTPM: 75.6
Samples: 4

Max nTPM: 98.0
Min nTPM: 66.2
Sample A Female 98.0
Sample B Female 71.4
Sample C Male 66.8
Sample D Male 66.2
Dorsal hippocampus
nTPM: 85.7
Samples: 4

Max nTPM: 111.2
Min nTPM: 65.9
Sample A Female 111.2
Sample B Female 82.5
Sample C Male 83.3
Sample D Male 65.9
Entorhinal cortex
nTPM: 75.0
Samples: 4

Max nTPM: 81.8
Min nTPM: 68.7
Sample A Female 81.8
Sample B Female 77.5
Sample C Male 71.9
Sample D Male 68.7
Ventral hippocampus
nTPM: 79.4
Samples: 4

Max nTPM: 90.7
Min nTPM: 58.4
Sample A Female 83.5
Sample B Female 58.4
Sample C Male 84.8
Sample D Male 90.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 34.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.1
Samples: 4

Max nTPM: 35.8
Min nTPM: 32.9
Sample A Male 33.2
Sample B Male 34.5
Sample C Female 32.9
Sample D Female 35.8
Hippocampal formation
nTPM: 31.5
Samples: 4

Max nTPM: 31.9
Min nTPM: 31.2
Sample A Male 31.2
Sample B Male 31.9
Sample C Female 31.3
Sample D Female 31.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.6
68745305 Antisense, RP_050210_01_F07, Mouse strain C57BL/6J (56 days, male) 7.2
71152461 Antisense, RP_050719_04_A08, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org