MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.3 nTPM
HPA Brain:53.2 nTPM
GTEx:29.3 nTPM
FANTOM5:49.7 Scaled Tags Per Million
Pig:110.5 nTPM
Mouse:46.8 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.0
2586 Male, age 75, left hemisphere 72.0
2666 Male, age 74, left hemisphere 53.9
2019 Male, age 18, unknown 49.1
2411 Female, age 72, unknown 48.9
1827 Male, age 72, unknown 47.0
1830 Male, age 51, unknown 42.8
1833 Male, age 53, unknown 42.6
1870 Female, age 42, unknown 41.9
2828 Female, age 72, unknown 41.9
2219 Male, age 76, both hemispheres 40.2
Dorsal raphe nucleus
nTPM: 45.4
2047 Male, age 72, unknown 54.1
1828 Male, age 53, unknown 46.6
2750 Male, age 76, both hemispheres 43.7
2298 Female, age 72, unknown 43.3
2016 Female, age 72, unknown 39.4
Inferior colliculus
nTPM: 45.6
2849 Male, age 72, unknown 49.8
1848 Female, age 42, unknown 48.4
1890 Male, age 53, unknown 43.4
2097 Female, age 72, unknown 40.8
Median raphe nucleus
nTPM: 47.7
2220 Male, age 76, midline 47.7
Periaquaductal grey, anterior
nTPM: 48.2
1947 Male, age 18, unknown 50.1
2502 Female, age 75, unknown 49.2
1795 Male, age 51, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 40.6
1840 Male, age 53, unknown 48.5
2464 Female, age 72, unknown 41.9
1831 Male, age 72, unknown 38.1
2850 Male, age 76, both hemispheres 33.9
Periaquaductal grey, lateral
nTPM: 35.0
2053 Male, age 18, unknown 39.2
2272 Male, age 74, both hemispheres 34.0
2140 Male, age 76, both hemispheres 31.8
Pretectal area
nTPM: 45.3
1816 Male, age 51, unknown 56.6
2007 Male, age 72, unknown 55.1
1817 Female, age 42, unknown 54.5
2407 Male, age 75, both hemispheres 47.8
1944 Female, age 72, unknown 47.1
1815 Male, age 53, unknown 45.4
2825 Male, age 18, unknown 42.4
2667 Female, age 75, unknown 40.5
2224 Female, age 72, unknown 39.3
2273 Male, age 74, both hemispheres 37.8
2316 Male, age 76, right hemisphere 32.2
Red nucleus
nTPM: 44.5
2588 Male, age 74, left hemisphere 63.1
2584 Male, age 75, left hemisphere 53.9
1821 Female, age 72, unknown 53.0
2785 Male, age 18, unknown 46.2
2725 Female, age 75, unknown 43.6
2503 Female, age 72, unknown 42.4
1865 Male, age 51, unknown 41.4
2769 Male, age 72, unknown 40.1
2227 Male, age 72, unknown 38.7
1954 Female, age 42, unknown 38.5
1904 Male, age 53, unknown 37.7
2823 Male, age 76, right hemisphere 35.6
Substantia nigra
nTPM: 53.2
2665 Male, age 74, both hemispheres 62.4
1941 Male, age 53, unknown 62.2
1916 Female, age 42, unknown 60.8
2241 Male, age 72, unknown 56.8
1851 Male, age 51, unknown 55.2
2583 Male, age 75, right hemisphere 52.9
1889 Female, age 72, unknown 49.5
2590 Female, age 75, unknown 45.4
2409 Female, age 72, unknown 44.4
2699 Male, age 18, unknown 42.6
Superior colliculus
nTPM: 45.8
2664 Male, age 75, both hemispheres 58.4
2668 Female, age 75, unknown 57.0
2587 Male, age 74, left hemisphere 50.1
1839 Male, age 51, unknown 47.1
1895 Male, age 76, right hemisphere 47.1
2261 Male, age 18, unknown 46.2
1796 Male, age 53, unknown 42.8
2087 Female, age 72, unknown 42.2
1995 Male, age 72, unknown 34.2
1913 Female, age 42, unknown 32.8
Ventral tegmental area
nTPM: 44.8
1915 Female, age 42, unknown 49.5
2410 Female, age 72, unknown 48.7
2223 Female, age 72, unknown 45.7
2021 Male, age 53, unknown 42.8
2218 Male, age 76, both hemispheres 41.9
1942 Male, age 51, unknown 40.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.3
Samples: 139

Max nTPM: 50.2
Min nTPM: 20.3
Std nTPM: 4.9
Median nTPM: 28.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 44.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 40.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 39.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 39.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 38.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 37.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 37.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 36.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.7
FF:10158-103A5 76 years, female 49.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 110.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 100.8
Samples: 4

Max nTPM: 120.3
Min nTPM: 77.1
Sample A Female 120.3
Sample B Female 77.1
Sample C Male 107.0
Sample D Male 98.9
Midbrain
nTPM: 110.5
Samples: 4

Max nTPM: 163.6
Min nTPM: 88.4
Sample A Female 163.6
Sample B Female 88.8
Sample C Male 101.2
Sample D Male 88.4
Periaqueductal gray
nTPM: 81.0
Samples: 3

Max nTPM: 87.6
Min nTPM: 74.2
Sample B Female 81.3
Sample C Male 87.6
Sample D Male 74.2
Superior colliculi
nTPM: 102.0
Samples: 4

Max nTPM: 113.0
Min nTPM: 76.4
Sample A Female 113.0
Sample B Female 76.4
Sample C Male 111.2
Sample D Male 107.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.8
Samples: 4

Max nTPM: 47.6
Min nTPM: 46.3
Sample A Male 47.6
Sample B Male 46.7
Sample C Female 46.3
Sample D Female 46.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
68745305 Antisense, RP_050210_01_F07, Mouse strain C57BL/6J (56 days, male) 5.8
71152461 Antisense, RP_050719_04_A08, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org