MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.2 nTPM
HPA Brain:137.2 nTPM
GTEx:94.2 nTPM
FANTOM5:70.6 Scaled Tags Per Million
Pig:148.6 nTPM
Mouse:92.5 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 137.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.7
2586 Male, age 75, left hemisphere 185.6
1827 Male, age 72, unknown 129.4
2019 Male, age 18, unknown 113.4
2666 Male, age 74, left hemisphere 113.2
2828 Female, age 72, unknown 110.7
2219 Male, age 76, both hemispheres 107.8
2411 Female, age 72, unknown 99.4
1870 Female, age 42, unknown 87.5
1833 Male, age 53, unknown 82.4
1830 Male, age 51, unknown 77.7
Dorsal raphe nucleus
nTPM: 89.2
2298 Female, age 72, unknown 111.9
2047 Male, age 72, unknown 89.1
1828 Male, age 53, unknown 88.3
2750 Male, age 76, both hemispheres 82.2
2016 Female, age 72, unknown 74.7
Inferior colliculus
nTPM: 94.5
2097 Female, age 72, unknown 108.6
1848 Female, age 42, unknown 94.1
1890 Male, age 53, unknown 91.5
2849 Male, age 72, unknown 83.9
Median raphe nucleus
nTPM: 96.8
2220 Male, age 76, midline 96.8
Periaquaductal grey, anterior
nTPM: 137.2
1795 Male, age 51, unknown 147.2
2502 Female, age 75, unknown 135.2
1947 Male, age 18, unknown 129.3
Periaquaductal grey, dorsal
nTPM: 82.4
1840 Male, age 53, unknown 94.5
2464 Female, age 72, unknown 87.8
1831 Male, age 72, unknown 84.0
2850 Male, age 76, both hemispheres 63.5
Periaquaductal grey, lateral
nTPM: 81.4
2053 Male, age 18, unknown 97.2
2272 Male, age 74, both hemispheres 76.8
2140 Male, age 76, both hemispheres 70.1
Pretectal area
nTPM: 123.2
1816 Male, age 51, unknown 192.0
2007 Male, age 72, unknown 153.9
1944 Female, age 72, unknown 148.2
1817 Female, age 42, unknown 144.4
1815 Male, age 53, unknown 131.9
2667 Female, age 75, unknown 126.2
2407 Male, age 75, both hemispheres 115.6
2825 Male, age 18, unknown 93.7
2224 Female, age 72, unknown 89.2
2273 Male, age 74, both hemispheres 86.2
2316 Male, age 76, right hemisphere 73.6
Red nucleus
nTPM: 94.7
2584 Male, age 75, left hemisphere 111.1
2785 Male, age 18, unknown 111.0
2588 Male, age 74, left hemisphere 110.0
1821 Female, age 72, unknown 106.1
2503 Female, age 72, unknown 93.7
2227 Male, age 72, unknown 91.7
2769 Male, age 72, unknown 90.4
1954 Female, age 42, unknown 88.1
2725 Female, age 75, unknown 88.1
1904 Male, age 53, unknown 87.9
1865 Male, age 51, unknown 87.1
2823 Male, age 76, right hemisphere 70.9
Substantia nigra
nTPM: 120.8
1916 Female, age 42, unknown 143.2
1941 Male, age 53, unknown 142.4
2665 Male, age 74, both hemispheres 139.5
1851 Male, age 51, unknown 132.9
1889 Female, age 72, unknown 131.1
2583 Male, age 75, right hemisphere 118.2
2241 Male, age 72, unknown 111.0
2409 Female, age 72, unknown 102.9
2590 Female, age 75, unknown 101.8
2699 Male, age 18, unknown 85.0
Superior colliculus
nTPM: 118.7
2664 Male, age 75, both hemispheres 162.1
2261 Male, age 18, unknown 144.7
1796 Male, age 53, unknown 139.9
2087 Female, age 72, unknown 139.0
2668 Female, age 75, unknown 137.6
1895 Male, age 76, right hemisphere 96.2
1913 Female, age 42, unknown 94.2
2587 Male, age 74, left hemisphere 93.4
1995 Male, age 72, unknown 91.4
1839 Male, age 51, unknown 88.9
Ventral tegmental area
nTPM: 103.8
2410 Female, age 72, unknown 125.6
1915 Female, age 42, unknown 114.9
2218 Male, age 76, both hemispheres 108.4
1942 Male, age 51, unknown 102.5
2223 Female, age 72, unknown 92.2
2021 Male, age 53, unknown 79.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 94.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.2
Samples: 139

Max nTPM: 264.5
Min nTPM: 50.1
Std nTPM: 28.7
Median nTPM: 90.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 264.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 176.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 163.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 161.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 156.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 148.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 138.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 138.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 137.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 136.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 135.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.6
FF:10158-103A5 76 years, female 70.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 148.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.2
Samples: 4

Max nTPM: 123.8
Min nTPM: 71.7
Sample A Female 123.8
Sample B Female 78.4
Sample C Male 107.0
Sample D Male 71.7
Midbrain
nTPM: 135.8
Samples: 4

Max nTPM: 222.7
Min nTPM: 92.0
Sample A Female 92.0
Sample B Female 96.2
Sample C Male 222.7
Sample D Male 132.1
Periaqueductal gray
nTPM: 91.3
Samples: 3

Max nTPM: 100.1
Min nTPM: 85.1
Sample B Female 88.6
Sample C Male 100.1
Sample D Male 85.1
Superior colliculi
nTPM: 148.6
Samples: 4

Max nTPM: 199.8
Min nTPM: 109.5
Sample A Female 143.7
Sample B Female 109.5
Sample C Male 199.8
Sample D Male 141.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.5
Samples: 4

Max nTPM: 94.8
Min nTPM: 91.1
Sample A Male 94.8
Sample B Male 91.5
Sample C Female 91.1
Sample D Female 92.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
68637491 Antisense, RP_050126_01_A06, Mouse strain C57BL/6J (56 days, male) 7.7

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