HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:25.1 nTPM
HPA Brain:167.8 nTPM
GTEx:25.1 nTPM
FANTOM5:213.5 Scaled Tags Per Million
Pig:39.0 nTPM
Mouse:3.9 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019010Antibody HPA019070Antibody HPA026643
Glial cells Not detectedNot detectedLow
Neuronal cells LowMediumLow







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 167.8
Sample id Sample description nTPM
Hippocampus
nTPM: 167.8
2529 Female, age 94, left hemisphere 220.7
1911 Female, age 85, right hemisphere 191.3
2148 Female, age 91, left hemisphere 177.0
1898 Male, age 80, left hemisphere 153.0
1855 Male, age 76, left hemisphere 152.5
2621 Female, age 67, right hemisphere 112.4
Dentate gyrus
nTPM: 148.1
2528 Male, age 74, both hemispheres 193.5
2010 Male, age 76, both hemispheres 163.3
2530 Female, age 94, left hemisphere 155.8
2246 Female, age 85, both hemispheres 144.1
2531 Female, age 67, both hemispheres 124.3
1927 Female, age 91, both hemispheres 107.7
Entorhinal gyrus
nTPM: 111.9
2117 Female, age 91, right hemisphere 185.2
1787 Male, age 76, left hemisphere 127.7
2686 Male, age 75, right hemisphere 107.3
1938 Female, age 85, left hemisphere 104.0
2764 Male, age 80, right hemisphere 85.0
2613 Female, age 94, left hemisphere 62.0
Hippocampus, CA1
nTPM: 147.3
1873 Female, age 85, both hemispheres 200.8
2527 Male, age 74, both hemispheres 170.7
2082 Female, age 91, right hemisphere 165.7
2045 Male, age 76, both hemispheres 122.1
2749 Male, age 80, left hemisphere 77.1
Hippocampus, CA2
nTPM: 133.1
2113 Female, age 91, right hemisphere 192.6
2249 Male, age 74, both hemispheres 153.2
1963 Male, age 80, left hemisphere 128.3
1940 Female, age 85, left hemisphere 125.9
2437 Female, age 94, left hemisphere 118.9
1892 Male, age 76, both hemispheres 79.6
Hippocampus, CA3
nTPM: 131.7
1891 Female, age 85, both hemispheres 175.5
2861 Female, age 67, both hemispheres 159.6
2620 Female, age 94, left hemisphere 128.1
2436 Male, age 74, both hemispheres 122.6
1867 Male, age 76, both hemispheres 112.5
2137 Male, age 80, left hemisphere 91.9
Parahippocampal cortex
nTPM: 106.1
2018 Male, age 76, both hemispheres 142.7
2245 Female, age 91, both hemispheres 129.2
2692 Male, age 74, both hemispheres 129.0
1990 Female, age 91, right hemisphere 121.3
2622 Female, age 67, right hemisphere 104.6
1933 Female, age 85, both hemispheres 103.5
2250 Female, age 67, right hemisphere 97.2
1850 Male, age 80, both hemispheres 94.5
2532 Female, age 72, left hemisphere 70.9
2693 Female, age 94, both hemispheres 68.1
Perirhinal gyrus
nTPM: 94.5
1847 Female, age 91, left hemisphere 105.1
2521 Female, age 94, right hemisphere 97.9
1841 Female, age 85, right hemisphere 96.9
2848 Male, age 76, right hemisphere 88.4
1794 Male, age 80, right hemisphere 84.3
Subiculum
nTPM: 144.5
2729 Female, age 91, right hemisphere 225.6
2619 Male, age 74, both hemispheres 165.3
2042 Male, age 76, both hemispheres 145.7
1977 Female, age 85, both hemispheres 117.0
2438 Female, age 94, left hemisphere 110.2
1901 Male, age 80, both hemispheres 103.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.1
Samples: 197

Max nTPM: 80.3
Min nTPM: 10.1
Std nTPM: 10.5
Median nTPM: 23.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 80.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 63.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 61.4
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 58.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 54.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 52.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 51.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 49.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 46.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 42.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 41.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 213.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 213.5
FF:10153-102I9 76 years, female 288.9
FF:10169-103B7 60 years, female 138.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 39.0
Pig sample Sample description nTPM
Subiculum
nTPM: 39.0
Samples: 4

Max nTPM: 59.9
Min nTPM: 21.8
Sample A Female 32.0
Sample B Female 21.8
Sample C Male 42.3
Sample D Male 59.9
Dorsal hippocampus
nTPM: 25.5
Samples: 4

Max nTPM: 40.7
Min nTPM: 16.9
Sample A Female 23.3
Sample B Female 20.9
Sample C Male 40.7
Sample D Male 16.9
Entorhinal cortex
nTPM: 36.4
Samples: 4

Max nTPM: 52.1
Min nTPM: 18.3
Sample A Female 52.1
Sample B Female 38.4
Sample C Male 36.7
Sample D Male 18.3
Ventral hippocampus
nTPM: 31.8
Samples: 4

Max nTPM: 53.1
Min nTPM: 21.1
Sample A Female 26.6
Sample B Female 21.1
Sample C Male 53.1
Sample D Male 26.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.9
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.7
Sample A Male 3.7
Sample B Male 3.7
Sample C Female 3.8
Sample D Female 4.4
Hippocampal formation
nTPM: 2.0
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.5
Sample A Male 1.5
Sample B Male 2.3
Sample C Female 2.3
Sample D Female 1.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
70812687 Antisense, RP_050712_02_D08, Mouse strain C57BL/6J (56 days, male) 0.7
68523294 Antisense, RP_050118_02_E01, Mouse strain C57BL/6J (56 days, male) 0.2

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