MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.0 nTPM
HPA Brain:134.8 nTPM
GTEx:23.0 nTPM
FANTOM5:212.3 Scaled Tags Per Million
Pig:139.3 nTPM
Mouse:3.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 134.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.1
2828 Female, age 72, unknown 116.0
2586 Male, age 75, left hemisphere 108.7
1870 Female, age 42, unknown 103.0
2666 Male, age 74, left hemisphere 97.9
2411 Female, age 72, unknown 79.2
1827 Male, age 72, unknown 76.0
1830 Male, age 51, unknown 74.1
2019 Male, age 18, unknown 69.1
1833 Male, age 53, unknown 67.8
2219 Male, age 76, both hemispheres 59.3
Dorsal raphe nucleus
nTPM: 103.1
2016 Female, age 72, unknown 146.2
2298 Female, age 72, unknown 103.8
1828 Male, age 53, unknown 100.6
2047 Male, age 72, unknown 86.4
2750 Male, age 76, both hemispheres 78.7
Inferior colliculus
nTPM: 81.6
1890 Male, age 53, unknown 90.7
2849 Male, age 72, unknown 84.5
2097 Female, age 72, unknown 76.1
1848 Female, age 42, unknown 75.1
Median raphe nucleus
nTPM: 84.2
2220 Male, age 76, midline 84.2
Periaquaductal grey, anterior
nTPM: 118.4
1795 Male, age 51, unknown 138.9
2502 Female, age 75, unknown 122.7
1947 Male, age 18, unknown 93.6
Periaquaductal grey, dorsal
nTPM: 134.8
1831 Male, age 72, unknown 161.7
2850 Male, age 76, both hemispheres 144.6
1840 Male, age 53, unknown 135.2
2464 Female, age 72, unknown 97.8
Periaquaductal grey, lateral
nTPM: 133.8
2053 Male, age 18, unknown 157.7
2140 Male, age 76, both hemispheres 153.0
2272 Male, age 74, both hemispheres 90.6
Pretectal area
nTPM: 96.4
2273 Male, age 74, both hemispheres 124.0
2667 Female, age 75, unknown 120.7
2224 Female, age 72, unknown 120.0
2316 Male, age 76, right hemisphere 113.1
2825 Male, age 18, unknown 104.0
2407 Male, age 75, both hemispheres 98.3
1815 Male, age 53, unknown 95.2
1944 Female, age 72, unknown 84.7
1817 Female, age 42, unknown 77.4
1816 Male, age 51, unknown 71.3
2007 Male, age 72, unknown 52.2
Red nucleus
nTPM: 73.0
2503 Female, age 72, unknown 85.2
2769 Male, age 72, unknown 80.2
2227 Male, age 72, unknown 78.8
1904 Male, age 53, unknown 75.7
1865 Male, age 51, unknown 73.4
1954 Female, age 42, unknown 72.4
2725 Female, age 75, unknown 71.4
1821 Female, age 72, unknown 71.2
2584 Male, age 75, left hemisphere 70.7
2588 Male, age 74, left hemisphere 69.5
2785 Male, age 18, unknown 68.4
2823 Male, age 76, right hemisphere 58.6
Substantia nigra
nTPM: 90.5
2699 Male, age 18, unknown 140.4
1851 Male, age 51, unknown 105.3
2665 Male, age 74, both hemispheres 102.8
1916 Female, age 42, unknown 88.1
2409 Female, age 72, unknown 87.8
2590 Female, age 75, unknown 80.1
1941 Male, age 53, unknown 80.0
2241 Male, age 72, unknown 76.9
2583 Male, age 75, right hemisphere 76.5
1889 Female, age 72, unknown 67.1
Superior colliculus
nTPM: 111.8
1913 Female, age 42, unknown 188.2
1995 Male, age 72, unknown 181.4
2664 Male, age 75, both hemispheres 126.7
2087 Female, age 72, unknown 105.4
2587 Male, age 74, left hemisphere 101.3
1839 Male, age 51, unknown 99.4
1796 Male, age 53, unknown 98.8
2668 Female, age 75, unknown 87.1
2261 Male, age 18, unknown 78.2
1895 Male, age 76, right hemisphere 51.7
Ventral tegmental area
nTPM: 107.2
2021 Male, age 53, unknown 127.0
1915 Female, age 42, unknown 119.3
1942 Male, age 51, unknown 115.3
2223 Female, age 72, unknown 110.7
2218 Male, age 76, both hemispheres 91.1
2410 Female, age 72, unknown 80.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.0
Samples: 139

Max nTPM: 49.0
Min nTPM: 6.8
Std nTPM: 8.8
Median nTPM: 21.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 49.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 47.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 46.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 43.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 42.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 40.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 40.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 40.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 40.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 39.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 38.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 212.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 212.3
FF:10158-103A5 76 years, female 212.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 139.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.2
Samples: 4

Max nTPM: 192.0
Min nTPM: 41.4
Sample A Female 47.4
Sample B Female 192.0
Sample C Male 41.4
Sample D Male 63.9
Midbrain
nTPM: 47.9
Samples: 4

Max nTPM: 70.4
Min nTPM: 31.7
Sample A Female 70.4
Sample B Female 31.7
Sample C Male 53.9
Sample D Male 35.5
Periaqueductal gray
nTPM: 26.0
Samples: 3

Max nTPM: 28.3
Min nTPM: 24.3
Sample B Female 25.3
Sample C Male 28.3
Sample D Male 24.3
Superior colliculi
nTPM: 139.3
Samples: 4

Max nTPM: 339.1
Min nTPM: 53.4
Sample A Female 105.0
Sample B Female 339.1
Sample C Male 53.4
Sample D Male 59.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.4
Sample A Male 2.4
Sample B Male 3.4
Sample C Female 3.4
Sample D Female 3.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70812687 Antisense, RP_050712_02_D08, Mouse strain C57BL/6J (56 days, male) 0.4
68523294 Antisense, RP_050118_02_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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