MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1124.7 nTPM
HPA Brain:1064.5 nTPM
GTEx:1124.7 nTPM
FANTOM5:1731.6 Scaled Tags Per Million
Pig:0.2 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1064.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 635.0
2586 Male, age 75, left hemisphere 1015.4
2828 Female, age 72, unknown 954.3
1870 Female, age 42, unknown 740.1
1833 Male, age 53, unknown 610.5
1830 Male, age 51, unknown 602.3
1827 Male, age 72, unknown 557.8
2666 Male, age 74, left hemisphere 556.6
2411 Female, age 72, unknown 531.3
2019 Male, age 18, unknown 445.6
2219 Male, age 76, both hemispheres 335.7
Dorsal raphe nucleus
nTPM: 741.3
1828 Male, age 53, unknown 956.9
2047 Male, age 72, unknown 870.6
2016 Female, age 72, unknown 840.6
2750 Male, age 76, both hemispheres 566.1
2298 Female, age 72, unknown 472.3
Inferior colliculus
nTPM: 726.3
2849 Male, age 72, unknown 784.4
1890 Male, age 53, unknown 748.1
1848 Female, age 42, unknown 728.7
2097 Female, age 72, unknown 644.1
Median raphe nucleus
nTPM: 796.5
2220 Male, age 76, midline 796.5
Periaquaductal grey, anterior
nTPM: 570.1
2502 Female, age 75, unknown 686.7
1795 Male, age 51, unknown 613.6
1947 Male, age 18, unknown 410.2
Periaquaductal grey, dorsal
nTPM: 697.9
2850 Male, age 76, both hemispheres 1102.0
1840 Male, age 53, unknown 617.6
1831 Male, age 72, unknown 544.7
2464 Female, age 72, unknown 527.1
Periaquaductal grey, lateral
nTPM: 708.0
2140 Male, age 76, both hemispheres 861.3
2053 Male, age 18, unknown 731.6
2272 Male, age 74, both hemispheres 531.2
Pretectal area
nTPM: 623.4
2667 Female, age 75, unknown 775.0
1944 Female, age 72, unknown 769.4
1817 Female, age 42, unknown 764.3
2273 Male, age 74, both hemispheres 709.1
2825 Male, age 18, unknown 682.3
1816 Male, age 51, unknown 644.2
2224 Female, age 72, unknown 557.3
2316 Male, age 76, right hemisphere 535.3
1815 Male, age 53, unknown 500.5
2407 Male, age 75, both hemispheres 473.2
2007 Male, age 72, unknown 446.9
Red nucleus
nTPM: 822.7
1954 Female, age 42, unknown 1052.7
2769 Male, age 72, unknown 942.1
2503 Female, age 72, unknown 895.6
1821 Female, age 72, unknown 889.5
2227 Male, age 72, unknown 889.3
2823 Male, age 76, right hemisphere 837.5
1904 Male, age 53, unknown 802.8
2725 Female, age 75, unknown 800.5
1865 Male, age 51, unknown 767.4
2588 Male, age 74, left hemisphere 749.3
2584 Male, age 75, left hemisphere 656.8
2785 Male, age 18, unknown 588.7
Substantia nigra
nTPM: 1064.5
2699 Male, age 18, unknown 2220.9
1916 Female, age 42, unknown 1476.8
1851 Male, age 51, unknown 1098.6
2241 Male, age 72, unknown 1009.0
2409 Female, age 72, unknown 979.8
1889 Female, age 72, unknown 870.3
2665 Male, age 74, both hemispheres 848.9
2583 Male, age 75, right hemisphere 726.7
2590 Female, age 75, unknown 711.2
1941 Male, age 53, unknown 703.2
Superior colliculus
nTPM: 643.8
1796 Male, age 53, unknown 848.6
2664 Male, age 75, both hemispheres 723.8
1995 Male, age 72, unknown 681.3
2587 Male, age 74, left hemisphere 666.8
2087 Female, age 72, unknown 666.3
1913 Female, age 42, unknown 619.1
2261 Male, age 18, unknown 617.3
2668 Female, age 75, unknown 579.7
1839 Male, age 51, unknown 578.0
1895 Male, age 76, right hemisphere 456.7
Ventral tegmental area
nTPM: 821.5
1915 Female, age 42, unknown 970.8
2410 Female, age 72, unknown 837.1
2021 Male, age 53, unknown 829.5
2218 Male, age 76, both hemispheres 821.3
1942 Male, age 51, unknown 748.2
2223 Female, age 72, unknown 722.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1124.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1124.7
Samples: 139

Max nTPM: 4932.9
Min nTPM: 112.8
Std nTPM: 819.5
Median nTPM: 886.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 4932.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3582.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3577.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 3398.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2973.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 2912.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 2900.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2822.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 2814.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2751.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 2668.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1731.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1731.6
FF:10158-103A5 76 years, female 1731.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.3
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 1.1
Sample C Male 0.0
Sample D Male 0.0

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