MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:286.8 nTPM
HPA Brain:339.9 nTPM
GTEx:286.8 nTPM
FANTOM5:408.6 Scaled Tags Per Million
Pig:242.4 nTPM
Mouse:36.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 339.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 230.7
2586 Male, age 75, left hemisphere 294.9
2828 Female, age 72, unknown 250.9
1870 Female, age 42, unknown 247.0
1833 Male, age 53, unknown 245.4
1830 Male, age 51, unknown 237.1
2411 Female, age 72, unknown 235.2
2019 Male, age 18, unknown 215.5
2219 Male, age 76, both hemispheres 203.8
2666 Male, age 74, left hemisphere 191.8
1827 Male, age 72, unknown 185.1
Dorsal raphe nucleus
nTPM: 201.7
2750 Male, age 76, both hemispheres 259.7
2047 Male, age 72, unknown 209.2
1828 Male, age 53, unknown 198.6
2298 Female, age 72, unknown 181.1
2016 Female, age 72, unknown 159.9
Inferior colliculus
nTPM: 166.8
2849 Male, age 72, unknown 197.6
1890 Male, age 53, unknown 182.6
1848 Female, age 42, unknown 161.1
2097 Female, age 72, unknown 125.9
Median raphe nucleus
nTPM: 339.9
2220 Male, age 76, midline 339.9
Periaquaductal grey, anterior
nTPM: 188.4
1795 Male, age 51, unknown 203.2
2502 Female, age 75, unknown 196.5
1947 Male, age 18, unknown 165.5
Periaquaductal grey, dorsal
nTPM: 192.8
2850 Male, age 76, both hemispheres 258.3
1831 Male, age 72, unknown 202.7
2464 Female, age 72, unknown 159.6
1840 Male, age 53, unknown 150.5
Periaquaductal grey, lateral
nTPM: 198.1
2140 Male, age 76, both hemispheres 205.2
2053 Male, age 18, unknown 198.8
2272 Male, age 74, both hemispheres 190.3
Pretectal area
nTPM: 201.1
2407 Male, age 75, both hemispheres 231.5
2007 Male, age 72, unknown 223.0
1816 Male, age 51, unknown 222.5
1815 Male, age 53, unknown 220.6
1817 Female, age 42, unknown 214.5
2825 Male, age 18, unknown 203.4
1944 Female, age 72, unknown 193.9
2224 Female, age 72, unknown 192.3
2667 Female, age 75, unknown 187.4
2273 Male, age 74, both hemispheres 180.8
2316 Male, age 76, right hemisphere 142.5
Red nucleus
nTPM: 275.7
2503 Female, age 72, unknown 319.4
1865 Male, age 51, unknown 311.1
1904 Male, age 53, unknown 298.4
2769 Male, age 72, unknown 297.6
2227 Male, age 72, unknown 281.9
2588 Male, age 74, left hemisphere 279.3
2823 Male, age 76, right hemisphere 273.2
2785 Male, age 18, unknown 271.5
2584 Male, age 75, left hemisphere 267.5
1954 Female, age 42, unknown 246.0
1821 Female, age 72, unknown 243.2
2725 Female, age 75, unknown 219.1
Substantia nigra
nTPM: 257.8
2699 Male, age 18, unknown 322.7
1916 Female, age 42, unknown 318.9
2665 Male, age 74, both hemispheres 308.3
2583 Male, age 75, right hemisphere 271.5
1851 Male, age 51, unknown 264.1
2590 Female, age 75, unknown 250.1
1941 Male, age 53, unknown 242.0
1889 Female, age 72, unknown 225.4
2409 Female, age 72, unknown 207.9
2241 Male, age 72, unknown 167.3
Superior colliculus
nTPM: 231.4
2668 Female, age 75, unknown 292.4
2664 Male, age 75, both hemispheres 281.9
1913 Female, age 42, unknown 273.8
1995 Male, age 72, unknown 250.3
1796 Male, age 53, unknown 244.0
2587 Male, age 74, left hemisphere 235.6
2261 Male, age 18, unknown 211.2
2087 Female, age 72, unknown 189.1
1839 Male, age 51, unknown 180.1
1895 Male, age 76, right hemisphere 155.3
Ventral tegmental area
nTPM: 285.8
2223 Female, age 72, unknown 434.3
2218 Male, age 76, both hemispheres 302.1
1915 Female, age 42, unknown 262.2
2410 Female, age 72, unknown 242.1
2021 Male, age 53, unknown 237.2
1942 Male, age 51, unknown 236.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 286.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 286.8
Samples: 139

Max nTPM: 783.7
Min nTPM: 107.8
Std nTPM: 126.1
Median nTPM: 253.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 783.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 666.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 647.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 636.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 606.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 566.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 562.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 541.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 539.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 521.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 520.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 408.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 408.6
FF:10158-103A5 76 years, female 408.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 242.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 242.4
Samples: 4

Max nTPM: 278.7
Min nTPM: 212.8
Sample A Female 278.7
Sample B Female 230.0
Sample C Male 212.8
Sample D Male 248.2
Midbrain
nTPM: 227.0
Samples: 4

Max nTPM: 438.8
Min nTPM: 110.5
Sample A Female 438.8
Sample B Female 205.4
Sample C Male 153.3
Sample D Male 110.5
Periaqueductal gray
nTPM: 168.0
Samples: 3

Max nTPM: 183.6
Min nTPM: 160.0
Sample B Female 160.3
Sample C Male 183.6
Sample D Male 160.0
Superior colliculi
nTPM: 208.1
Samples: 4

Max nTPM: 255.3
Min nTPM: 150.9
Sample A Female 255.3
Sample B Female 248.0
Sample C Male 150.9
Sample D Male 178.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 48.2
Min nTPM: 29.9
Sample A Male 35.7
Sample B Male 29.9
Sample C Female 30.9
Sample D Female 48.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68919880 Antisense, RP_050301_02_F11, Mouse strain C57BL/6J (56 days, male) 0.6

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