MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:100.1 nTPM
HPA Brain:147.9 nTPM
GTEx:100.1 nTPM
FANTOM5:98.3 Scaled Tags Per Million
Pig:67.8 nTPM
Mouse:129.3 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 147.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.1
2586 Male, age 75, left hemisphere 192.2
2828 Female, age 72, unknown 155.8
2666 Male, age 74, left hemisphere 143.5
2219 Male, age 76, both hemispheres 140.7
1827 Male, age 72, unknown 128.3
1870 Female, age 42, unknown 125.4
1833 Male, age 53, unknown 110.9
2411 Female, age 72, unknown 109.1
1830 Male, age 51, unknown 105.3
2019 Male, age 18, unknown 60.1
Dorsal raphe nucleus
nTPM: 108.5
2047 Male, age 72, unknown 117.2
2750 Male, age 76, both hemispheres 115.9
2298 Female, age 72, unknown 103.6
2016 Female, age 72, unknown 103.4
1828 Male, age 53, unknown 102.1
Inferior colliculus
nTPM: 111.7
2849 Male, age 72, unknown 149.6
1848 Female, age 42, unknown 124.6
1890 Male, age 53, unknown 89.1
2097 Female, age 72, unknown 83.6
Median raphe nucleus
nTPM: 135.3
2220 Male, age 76, midline 135.3
Periaquaductal grey, anterior
nTPM: 147.9
1947 Male, age 18, unknown 159.6
1795 Male, age 51, unknown 148.1
2502 Female, age 75, unknown 136.1
Periaquaductal grey, dorsal
nTPM: 114.0
1840 Male, age 53, unknown 131.6
2464 Female, age 72, unknown 112.8
2850 Male, age 76, both hemispheres 107.1
1831 Male, age 72, unknown 104.3
Periaquaductal grey, lateral
nTPM: 104.1
2053 Male, age 18, unknown 139.0
2140 Male, age 76, both hemispheres 94.6
2272 Male, age 74, both hemispheres 78.8
Pretectal area
nTPM: 115.0
2825 Male, age 18, unknown 144.2
1816 Male, age 51, unknown 135.4
2407 Male, age 75, both hemispheres 131.8
2667 Female, age 75, unknown 126.4
1944 Female, age 72, unknown 120.1
2007 Male, age 72, unknown 116.4
1815 Male, age 53, unknown 111.6
1817 Female, age 42, unknown 108.8
2224 Female, age 72, unknown 108.6
2273 Male, age 74, both hemispheres 82.4
2316 Male, age 76, right hemisphere 79.3
Red nucleus
nTPM: 92.7
2584 Male, age 75, left hemisphere 131.0
2588 Male, age 74, left hemisphere 126.7
2725 Female, age 75, unknown 109.6
2503 Female, age 72, unknown 102.5
2769 Male, age 72, unknown 89.0
2227 Male, age 72, unknown 86.3
1954 Female, age 42, unknown 85.1
1865 Male, age 51, unknown 80.5
1821 Female, age 72, unknown 80.2
2785 Male, age 18, unknown 77.6
1904 Male, age 53, unknown 75.4
2823 Male, age 76, right hemisphere 68.2
Substantia nigra
nTPM: 121.1
1941 Male, age 53, unknown 175.9
2665 Male, age 74, both hemispheres 140.7
2699 Male, age 18, unknown 129.4
2583 Male, age 75, right hemisphere 122.4
1851 Male, age 51, unknown 120.8
1916 Female, age 42, unknown 115.7
1889 Female, age 72, unknown 114.9
2241 Male, age 72, unknown 104.5
2590 Female, age 75, unknown 99.0
2409 Female, age 72, unknown 88.1
Superior colliculus
nTPM: 124.4
2664 Male, age 75, both hemispheres 189.8
2261 Male, age 18, unknown 141.5
1796 Male, age 53, unknown 127.8
1839 Male, age 51, unknown 125.8
2668 Female, age 75, unknown 118.6
2087 Female, age 72, unknown 113.2
2587 Male, age 74, left hemisphere 111.5
1895 Male, age 76, right hemisphere 108.1
1913 Female, age 42, unknown 106.7
1995 Male, age 72, unknown 101.2
Ventral tegmental area
nTPM: 116.7
2223 Female, age 72, unknown 147.8
1942 Male, age 51, unknown 120.9
1915 Female, age 42, unknown 120.6
2021 Male, age 53, unknown 112.4
2218 Male, age 76, both hemispheres 104.7
2410 Female, age 72, unknown 93.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 100.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 100.1
Samples: 139

Max nTPM: 253.0
Min nTPM: 61.5
Std nTPM: 26.7
Median nTPM: 94.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 253.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 214.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 175.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 161.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 152.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 149.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 145.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 142.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 142.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 139.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 139.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.3
FF:10158-103A5 76 years, female 98.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.9
Samples: 4

Max nTPM: 49.9
Min nTPM: 37.6
Sample A Female 37.6
Sample B Female 38.7
Sample C Male 49.9
Sample D Male 45.3
Midbrain
nTPM: 67.8
Samples: 4

Max nTPM: 115.9
Min nTPM: 34.0
Sample A Female 34.0
Sample B Female 42.6
Sample C Male 115.9
Sample D Male 78.6
Periaqueductal gray
nTPM: 42.1
Samples: 3

Max nTPM: 43.4
Min nTPM: 40.7
Sample B Female 42.1
Sample C Male 43.4
Sample D Male 40.7
Superior colliculi
nTPM: 60.0
Samples: 4

Max nTPM: 77.7
Min nTPM: 39.8
Sample A Female 54.2
Sample B Female 39.8
Sample C Male 77.7
Sample D Male 68.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.3
Samples: 4

Max nTPM: 132.7
Min nTPM: 122.7
Sample A Male 132.7
Sample B Male 122.7
Sample C Female 132.6
Sample D Female 129.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
71280844 Antisense, RP_050818_01_G01, Mouse strain C57BL/6J (56 days, male) 6.4

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