MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.3 nTPM
HPA Brain:12.4 nTPM
GTEx:23.3 nTPM
FANTOM5:39.6 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:8.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.0
2586 Male, age 75, left hemisphere 18.7
1827 Male, age 72, unknown 14.9
2828 Female, age 72, unknown 14.1
1870 Female, age 42, unknown 12.8
2019 Male, age 18, unknown 12.4
2411 Female, age 72, unknown 11.9
2666 Male, age 74, left hemisphere 11.2
1833 Male, age 53, unknown 10.0
1830 Male, age 51, unknown 8.1
2219 Male, age 76, both hemispheres 6.0
Dorsal raphe nucleus
nTPM: 11.7
2298 Female, age 72, unknown 15.6
2016 Female, age 72, unknown 12.1
2047 Male, age 72, unknown 11.0
1828 Male, age 53, unknown 10.5
2750 Male, age 76, both hemispheres 9.4
Inferior colliculus
nTPM: 11.1
2849 Male, age 72, unknown 12.2
1848 Female, age 42, unknown 12.1
1890 Male, age 53, unknown 11.0
2097 Female, age 72, unknown 9.4
Median raphe nucleus
nTPM: 9.2
2220 Male, age 76, midline 9.2
Periaquaductal grey, anterior
nTPM: 11.0
1795 Male, age 51, unknown 12.8
2502 Female, age 75, unknown 11.4
1947 Male, age 18, unknown 9.0
Periaquaductal grey, dorsal
nTPM: 12.1
2464 Female, age 72, unknown 13.9
1840 Male, age 53, unknown 12.6
1831 Male, age 72, unknown 12.4
2850 Male, age 76, both hemispheres 9.6
Periaquaductal grey, lateral
nTPM: 11.4
2053 Male, age 18, unknown 13.8
2140 Male, age 76, both hemispheres 10.4
2272 Male, age 74, both hemispheres 10.1
Pretectal area
nTPM: 12.4
1816 Male, age 51, unknown 14.6
1817 Female, age 42, unknown 14.4
2825 Male, age 18, unknown 13.7
2316 Male, age 76, right hemisphere 13.4
2007 Male, age 72, unknown 13.1
2273 Male, age 74, both hemispheres 12.1
1815 Male, age 53, unknown 11.8
2667 Female, age 75, unknown 11.7
1944 Female, age 72, unknown 10.8
2224 Female, age 72, unknown 10.7
2407 Male, age 75, both hemispheres 10.3
Red nucleus
nTPM: 12.0
1821 Female, age 72, unknown 13.1
1904 Male, age 53, unknown 12.8
2588 Male, age 74, left hemisphere 12.5
2769 Male, age 72, unknown 12.5
2823 Male, age 76, right hemisphere 12.2
1954 Female, age 42, unknown 12.0
2503 Female, age 72, unknown 12.0
2227 Male, age 72, unknown 11.8
2785 Male, age 18, unknown 11.7
2725 Female, age 75, unknown 11.3
1865 Male, age 51, unknown 10.9
2584 Male, age 75, left hemisphere 10.9
Substantia nigra
nTPM: 11.0
2409 Female, age 72, unknown 14.5
2583 Male, age 75, right hemisphere 13.6
1941 Male, age 53, unknown 12.2
1889 Female, age 72, unknown 11.9
1851 Male, age 51, unknown 11.1
2665 Male, age 74, both hemispheres 10.2
1916 Female, age 42, unknown 10.1
2590 Female, age 75, unknown 9.8
2699 Male, age 18, unknown 9.2
2241 Male, age 72, unknown 7.4
Superior colliculus
nTPM: 12.1
2668 Female, age 75, unknown 14.3
2587 Male, age 74, left hemisphere 13.4
1895 Male, age 76, right hemisphere 12.5
1796 Male, age 53, unknown 12.2
2261 Male, age 18, unknown 12.2
2664 Male, age 75, both hemispheres 12.0
1913 Female, age 42, unknown 11.5
1995 Male, age 72, unknown 11.4
1839 Male, age 51, unknown 11.3
2087 Female, age 72, unknown 10.2
Ventral tegmental area
nTPM: 9.6
1915 Female, age 42, unknown 11.3
1942 Male, age 51, unknown 11.1
2223 Female, age 72, unknown 10.1
2021 Male, age 53, unknown 10.0
2218 Male, age 76, both hemispheres 7.7
2410 Female, age 72, unknown 7.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.3
Samples: 139

Max nTPM: 44.6
Min nTPM: 11.8
Std nTPM: 5.5
Median nTPM: 22.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 44.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 39.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 37.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 37.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 35.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 35.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 34.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 33.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 33.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 32.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.6
FF:10158-103A5 76 years, female 39.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.2
Samples: 4

Max nTPM: 19.7
Min nTPM: 16.0
Sample A Female 18.1
Sample B Female 19.7
Sample C Male 18.9
Sample D Male 16.0
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 18.4
Min nTPM: 15.0
Sample A Female 17.1
Sample B Female 15.0
Sample C Male 16.6
Sample D Male 18.4
Periaqueductal gray
nTPM: 22.6
Samples: 3

Max nTPM: 26.8
Min nTPM: 17.7
Sample B Female 17.7
Sample C Male 26.8
Sample D Male 23.3
Superior colliculi
nTPM: 21.9
Samples: 4

Max nTPM: 32.5
Min nTPM: 17.4
Sample A Female 19.7
Sample B Female 32.5
Sample C Male 17.9
Sample D Male 17.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.4
Sample A Male 10.0
Sample B Male 7.4
Sample C Female 7.7
Sample D Female 9.8

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