MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:636.2 nTPM
HPA Brain:229.9 nTPM
GTEx:636.2 nTPM
FANTOM5:263.4 Scaled Tags Per Million
Pig:89.6 nTPM
Mouse:643.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 229.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 162.4
2019 Male, age 18, unknown 205.1
2411 Female, age 72, unknown 196.2
1827 Male, age 72, unknown 187.6
1870 Female, age 42, unknown 169.4
2219 Male, age 76, both hemispheres 164.2
1833 Male, age 53, unknown 152.5
2828 Female, age 72, unknown 146.6
2666 Male, age 74, left hemisphere 141.5
1830 Male, age 51, unknown 137.1
2586 Male, age 75, left hemisphere 123.5
Dorsal raphe nucleus
nTPM: 198.7
2298 Female, age 72, unknown 272.4
1828 Male, age 53, unknown 196.3
2047 Male, age 72, unknown 184.2
2750 Male, age 76, both hemispheres 176.2
2016 Female, age 72, unknown 164.4
Inferior colliculus
nTPM: 193.9
2097 Female, age 72, unknown 255.9
1890 Male, age 53, unknown 206.5
1848 Female, age 42, unknown 171.0
2849 Male, age 72, unknown 142.1
Median raphe nucleus
nTPM: 168.6
2220 Male, age 76, midline 168.6
Periaquaductal grey, anterior
nTPM: 192.8
1947 Male, age 18, unknown 205.8
2502 Female, age 75, unknown 204.4
1795 Male, age 51, unknown 168.3
Periaquaductal grey, dorsal
nTPM: 160.2
1840 Male, age 53, unknown 179.3
2850 Male, age 76, both hemispheres 161.8
2464 Female, age 72, unknown 158.6
1831 Male, age 72, unknown 140.9
Periaquaductal grey, lateral
nTPM: 152.8
2272 Male, age 74, both hemispheres 172.6
2053 Male, age 18, unknown 144.9
2140 Male, age 76, both hemispheres 141.0
Pretectal area
nTPM: 196.7
2007 Male, age 72, unknown 255.4
1816 Male, age 51, unknown 232.5
1817 Female, age 42, unknown 224.0
1944 Female, age 72, unknown 215.7
2224 Female, age 72, unknown 203.6
1815 Male, age 53, unknown 200.2
2667 Female, age 75, unknown 199.8
2273 Male, age 74, both hemispheres 197.9
2825 Male, age 18, unknown 152.8
2316 Male, age 76, right hemisphere 147.0
2407 Male, age 75, both hemispheres 134.9
Red nucleus
nTPM: 179.0
1821 Female, age 72, unknown 238.5
2503 Female, age 72, unknown 192.3
2725 Female, age 75, unknown 189.0
2785 Male, age 18, unknown 186.3
2227 Male, age 72, unknown 182.7
1865 Male, age 51, unknown 181.5
2769 Male, age 72, unknown 180.3
1954 Female, age 42, unknown 167.7
1904 Male, age 53, unknown 164.3
2823 Male, age 76, right hemisphere 161.5
2588 Male, age 74, left hemisphere 159.1
2584 Male, age 75, left hemisphere 144.8
Substantia nigra
nTPM: 229.9
1916 Female, age 42, unknown 329.5
1851 Male, age 51, unknown 299.8
2241 Male, age 72, unknown 275.7
2409 Female, age 72, unknown 244.2
1889 Female, age 72, unknown 233.8
1941 Male, age 53, unknown 227.9
2699 Male, age 18, unknown 197.1
2665 Male, age 74, both hemispheres 194.1
2590 Female, age 75, unknown 170.0
2583 Male, age 75, right hemisphere 127.0
Superior colliculus
nTPM: 168.8
2587 Male, age 74, left hemisphere 202.6
1895 Male, age 76, right hemisphere 195.3
2087 Female, age 72, unknown 191.1
2668 Female, age 75, unknown 186.2
1796 Male, age 53, unknown 181.5
2261 Male, age 18, unknown 173.8
1839 Male, age 51, unknown 154.2
1913 Female, age 42, unknown 145.9
1995 Male, age 72, unknown 133.2
2664 Male, age 75, both hemispheres 124.6
Ventral tegmental area
nTPM: 200.3
1915 Female, age 42, unknown 254.2
2410 Female, age 72, unknown 237.4
2218 Male, age 76, both hemispheres 191.2
2223 Female, age 72, unknown 189.8
1942 Male, age 51, unknown 171.7
2021 Male, age 53, unknown 157.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 636.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 636.2
Samples: 139

Max nTPM: 1239.7
Min nTPM: 314.3
Std nTPM: 184.0
Median nTPM: 601.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1239.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1171.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1155.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1105.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1076.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1075.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1059.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1027.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1022.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1008.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 934.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 263.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 263.4
FF:10158-103A5 76 years, female 263.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.9
Samples: 4

Max nTPM: 110.9
Min nTPM: 56.9
Sample A Female 110.9
Sample B Female 70.6
Sample C Male 81.0
Sample D Male 56.9
Midbrain
nTPM: 88.3
Samples: 4

Max nTPM: 104.8
Min nTPM: 78.1
Sample A Female 88.3
Sample B Female 82.0
Sample C Male 104.8
Sample D Male 78.1
Periaqueductal gray
nTPM: 66.2
Samples: 3

Max nTPM: 70.9
Min nTPM: 58.6
Sample B Female 69.2
Sample C Male 70.9
Sample D Male 58.6
Superior colliculi
nTPM: 89.6
Samples: 4

Max nTPM: 111.4
Min nTPM: 70.7
Sample A Female 98.0
Sample B Female 70.7
Sample C Male 111.4
Sample D Male 78.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 643.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 643.3
Samples: 4

Max nTPM: 746.3
Min nTPM: 536.3
Sample A Male 746.3
Sample B Male 616.4
Sample C Female 536.3
Sample D Female 674.2

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