MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.7 nTPM
HPA Brain:55.2 nTPM
GTEx:30.7 nTPM
FANTOM5:21.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.6
2019 Male, age 18, unknown 68.5
2586 Male, age 75, left hemisphere 51.8
2666 Male, age 74, left hemisphere 41.7
1830 Male, age 51, unknown 36.9
1833 Male, age 53, unknown 36.4
1827 Male, age 72, unknown 35.2
2828 Female, age 72, unknown 34.0
2411 Female, age 72, unknown 33.8
1870 Female, age 42, unknown 31.2
2219 Male, age 76, both hemispheres 26.9
Dorsal raphe nucleus
nTPM: 45.6
2047 Male, age 72, unknown 56.1
1828 Male, age 53, unknown 52.6
2298 Female, age 72, unknown 45.1
2750 Male, age 76, both hemispheres 41.9
2016 Female, age 72, unknown 32.2
Inferior colliculus
nTPM: 29.4
1848 Female, age 42, unknown 33.4
2849 Male, age 72, unknown 30.9
2097 Female, age 72, unknown 26.7
1890 Male, age 53, unknown 26.6
Median raphe nucleus
nTPM: 48.5
2220 Male, age 76, midline 48.5
Periaquaductal grey, anterior
nTPM: 28.7
2502 Female, age 75, unknown 33.6
1795 Male, age 51, unknown 31.5
1947 Male, age 18, unknown 21.1
Periaquaductal grey, dorsal
nTPM: 35.1
2850 Male, age 76, both hemispheres 46.6
1840 Male, age 53, unknown 34.4
2464 Female, age 72, unknown 31.8
1831 Male, age 72, unknown 27.7
Periaquaductal grey, lateral
nTPM: 37.5
2140 Male, age 76, both hemispheres 44.3
2053 Male, age 18, unknown 35.4
2272 Male, age 74, both hemispheres 32.9
Pretectal area
nTPM: 41.1
2007 Male, age 72, unknown 54.8
1944 Female, age 72, unknown 54.7
1817 Female, age 42, unknown 45.7
2407 Male, age 75, both hemispheres 42.5
2316 Male, age 76, right hemisphere 38.6
1815 Male, age 53, unknown 38.3
1816 Male, age 51, unknown 37.9
2667 Female, age 75, unknown 36.6
2224 Female, age 72, unknown 35.6
2273 Male, age 74, both hemispheres 35.1
2825 Male, age 18, unknown 31.7
Red nucleus
nTPM: 38.2
2785 Male, age 18, unknown 58.0
1821 Female, age 72, unknown 45.3
2725 Female, age 75, unknown 43.1
2584 Male, age 75, left hemisphere 42.8
2823 Male, age 76, right hemisphere 40.4
1865 Male, age 51, unknown 35.9
2769 Male, age 72, unknown 35.9
2588 Male, age 74, left hemisphere 34.7
2227 Male, age 72, unknown 34.5
2503 Female, age 72, unknown 32.0
1954 Female, age 42, unknown 29.6
1904 Male, age 53, unknown 25.7
Substantia nigra
nTPM: 55.2
1941 Male, age 53, unknown 85.3
1916 Female, age 42, unknown 78.7
2241 Male, age 72, unknown 59.2
1851 Male, age 51, unknown 57.8
2699 Male, age 18, unknown 52.4
1889 Female, age 72, unknown 51.7
2409 Female, age 72, unknown 46.3
2665 Male, age 74, both hemispheres 46.1
2583 Male, age 75, right hemisphere 38.1
2590 Female, age 75, unknown 36.9
Superior colliculus
nTPM: 34.5
2087 Female, age 72, unknown 47.0
2668 Female, age 75, unknown 39.2
1839 Male, age 51, unknown 38.0
2587 Male, age 74, left hemisphere 37.4
1895 Male, age 76, right hemisphere 37.2
2664 Male, age 75, both hemispheres 36.7
1796 Male, age 53, unknown 35.3
1913 Female, age 42, unknown 26.1
1995 Male, age 72, unknown 25.8
2261 Male, age 18, unknown 21.9
Ventral tegmental area
nTPM: 44.0
1915 Female, age 42, unknown 59.3
2218 Male, age 76, both hemispheres 49.8
2410 Female, age 72, unknown 44.1
2021 Male, age 53, unknown 38.6
1942 Male, age 51, unknown 36.7
2223 Female, age 72, unknown 35.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.7
Samples: 139

Max nTPM: 101.6
Min nTPM: 13.7
Std nTPM: 14.7
Median nTPM: 27.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 101.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 85.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 77.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 74.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 68.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 66.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 60.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 57.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 55.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 54.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 53.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

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