MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:425.5 nTPM
HPA Brain:475.4 nTPM
GTEx:425.5 nTPM
FANTOM5:294.6 Scaled Tags Per Million
Pig:448.0 nTPM
Mouse:865.1 nTPM
Allen mouse:22.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 475.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 404.5
2586 Male, age 75, left hemisphere 544.3
1827 Male, age 72, unknown 491.2
2666 Male, age 74, left hemisphere 484.6
2019 Male, age 18, unknown 382.2
2828 Female, age 72, unknown 382.0
2219 Male, age 76, both hemispheres 363.7
2411 Female, age 72, unknown 363.2
1870 Female, age 42, unknown 362.8
1833 Male, age 53, unknown 349.6
1830 Male, age 51, unknown 321.3
Dorsal raphe nucleus
nTPM: 380.0
2298 Female, age 72, unknown 443.3
2047 Male, age 72, unknown 427.2
1828 Male, age 53, unknown 376.4
2750 Male, age 76, both hemispheres 345.9
2016 Female, age 72, unknown 307.5
Inferior colliculus
nTPM: 475.4
2097 Female, age 72, unknown 529.0
2849 Male, age 72, unknown 482.5
1848 Female, age 42, unknown 455.2
1890 Male, age 53, unknown 434.9
Median raphe nucleus
nTPM: 404.2
2220 Male, age 76, midline 404.2
Periaquaductal grey, anterior
nTPM: 456.1
1947 Male, age 18, unknown 501.7
1795 Male, age 51, unknown 438.9
2502 Female, age 75, unknown 427.7
Periaquaductal grey, dorsal
nTPM: 380.6
1840 Male, age 53, unknown 443.9
1831 Male, age 72, unknown 375.5
2464 Female, age 72, unknown 359.9
2850 Male, age 76, both hemispheres 343.1
Periaquaductal grey, lateral
nTPM: 319.0
2053 Male, age 18, unknown 358.5
2140 Male, age 76, both hemispheres 334.5
2272 Male, age 74, both hemispheres 264.1
Pretectal area
nTPM: 429.5
1816 Male, age 51, unknown 574.0
2007 Male, age 72, unknown 547.7
1944 Female, age 72, unknown 540.3
1817 Female, age 42, unknown 508.1
1815 Male, age 53, unknown 431.9
2667 Female, age 75, unknown 420.8
2224 Female, age 72, unknown 387.8
2825 Male, age 18, unknown 379.3
2407 Male, age 75, both hemispheres 349.6
2316 Male, age 76, right hemisphere 322.4
2273 Male, age 74, both hemispheres 262.5
Red nucleus
nTPM: 364.1
1821 Female, age 72, unknown 444.5
2588 Male, age 74, left hemisphere 418.6
2584 Male, age 75, left hemisphere 411.3
2725 Female, age 75, unknown 391.7
2785 Male, age 18, unknown 372.6
2503 Female, age 72, unknown 359.8
1954 Female, age 42, unknown 346.6
2769 Male, age 72, unknown 346.0
2227 Male, age 72, unknown 333.6
2823 Male, age 76, right hemisphere 321.9
1865 Male, age 51, unknown 320.7
1904 Male, age 53, unknown 302.1
Substantia nigra
nTPM: 416.0
1916 Female, age 42, unknown 498.7
1889 Female, age 72, unknown 493.6
1941 Male, age 53, unknown 493.5
2665 Male, age 74, both hemispheres 436.9
1851 Male, age 51, unknown 425.7
2241 Male, age 72, unknown 383.1
2583 Male, age 75, right hemisphere 381.0
2590 Female, age 75, unknown 373.0
2409 Female, age 72, unknown 345.5
2699 Male, age 18, unknown 329.3
Superior colliculus
nTPM: 399.4
2664 Male, age 75, both hemispheres 488.5
1796 Male, age 53, unknown 462.1
2087 Female, age 72, unknown 457.9
2261 Male, age 18, unknown 438.3
2668 Female, age 75, unknown 422.6
1895 Male, age 76, right hemisphere 415.1
1839 Male, age 51, unknown 394.7
2587 Male, age 74, left hemisphere 367.2
1913 Female, age 42, unknown 288.7
1995 Male, age 72, unknown 258.7
Ventral tegmental area
nTPM: 380.9
1915 Female, age 42, unknown 459.0
2218 Male, age 76, both hemispheres 390.3
2410 Female, age 72, unknown 389.4
1942 Male, age 51, unknown 384.6
2223 Female, age 72, unknown 332.5
2021 Male, age 53, unknown 329.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 425.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 425.5
Samples: 139

Max nTPM: 1170.7
Min nTPM: 229.3
Std nTPM: 129.9
Median nTPM: 399.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1170.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 807.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 803.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 754.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 727.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 680.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 663.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 660.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 619.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 618.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 609.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 294.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 294.6
FF:10158-103A5 76 years, female 294.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 448.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 274.3
Samples: 4

Max nTPM: 394.5
Min nTPM: 143.4
Sample A Female 394.5
Sample B Female 193.2
Sample C Male 366.0
Sample D Male 143.4
Midbrain
nTPM: 356.8
Samples: 4

Max nTPM: 500.7
Min nTPM: 183.2
Sample A Female 183.2
Sample B Female 266.0
Sample C Male 500.7
Sample D Male 477.1
Periaqueductal gray
nTPM: 242.7
Samples: 3

Max nTPM: 294.0
Min nTPM: 208.5
Sample B Female 225.6
Sample C Male 294.0
Sample D Male 208.5
Superior colliculi
nTPM: 448.0
Samples: 4

Max nTPM: 624.9
Min nTPM: 265.2
Sample A Female 489.4
Sample B Female 265.2
Sample C Male 624.9
Sample D Male 412.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 865.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 865.1
Samples: 4

Max nTPM: 874.0
Min nTPM: 856.1
Sample A Male 868.5
Sample B Male 874.0
Sample C Female 861.9
Sample D Female 856.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.3
68563043 Antisense, RP_050125_01_A05, Mouse strain C57BL/6J (56 days, male) 26.2
70302222 Antisense, RP_050607_03_H03, Mouse strain C57BL/6J (56 days, male) 18.5

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