HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:81.5 nTPM
GTEx:11.0 nTPM
FANTOM5:33.5 Scaled Tags Per Million
Pig:14.1 nTPM
Mouse:15.4 nTPM
Allen mouse:1.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003334
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 81.5
Sample id Sample description nTPM
Hippocampus
nTPM: 71.9
1911 Female, age 85, right hemisphere 95.3
1855 Male, age 76, left hemisphere 83.0
2529 Female, age 94, left hemisphere 69.5
2621 Female, age 67, right hemisphere 65.9
1898 Male, age 80, left hemisphere 65.8
2148 Female, age 91, left hemisphere 52.0
Dentate gyrus
nTPM: 81.5
1927 Female, age 91, both hemispheres 97.9
2246 Female, age 85, both hemispheres 90.1
2010 Male, age 76, both hemispheres 88.0
2530 Female, age 94, left hemisphere 73.2
2528 Male, age 74, both hemispheres 72.3
2531 Female, age 67, both hemispheres 67.7
Entorhinal gyrus
nTPM: 68.1
1938 Female, age 85, left hemisphere 86.6
2117 Female, age 91, right hemisphere 73.0
2764 Male, age 80, right hemisphere 67.5
1787 Male, age 76, left hemisphere 66.0
2613 Female, age 94, left hemisphere 57.7
2686 Male, age 75, right hemisphere 57.7
Hippocampus, CA1
nTPM: 79.3
2045 Male, age 76, both hemispheres 106.8
1873 Female, age 85, both hemispheres 87.4
2082 Female, age 91, right hemisphere 74.1
2527 Male, age 74, both hemispheres 68.3
2749 Male, age 80, left hemisphere 60.0
Hippocampus, CA2
nTPM: 78.3
2437 Female, age 94, left hemisphere 89.0
2113 Female, age 91, right hemisphere 82.0
1940 Female, age 85, left hemisphere 81.1
1892 Male, age 76, both hemispheres 76.1
2249 Male, age 74, both hemispheres 74.6
1963 Male, age 80, left hemisphere 67.3
Hippocampus, CA3
nTPM: 74.7
1891 Female, age 85, both hemispheres 101.2
2436 Male, age 74, both hemispheres 79.1
2137 Male, age 80, left hemisphere 76.3
1867 Male, age 76, both hemispheres 74.0
2620 Female, age 94, left hemisphere 66.5
2861 Female, age 67, both hemispheres 51.0
Parahippocampal cortex
nTPM: 79.5
2693 Female, age 94, both hemispheres 96.4
1990 Female, age 91, right hemisphere 88.3
2692 Male, age 74, both hemispheres 86.1
2245 Female, age 91, both hemispheres 81.5
1850 Male, age 80, both hemispheres 80.9
1933 Female, age 85, both hemispheres 80.9
2532 Female, age 72, left hemisphere 80.1
2250 Female, age 67, right hemisphere 79.7
2018 Male, age 76, both hemispheres 78.0
2622 Female, age 67, right hemisphere 42.8
Perirhinal gyrus
nTPM: 80.5
2848 Male, age 76, right hemisphere 102.4
2521 Female, age 94, right hemisphere 85.5
1841 Female, age 85, right hemisphere 74.9
1847 Female, age 91, left hemisphere 70.3
1794 Male, age 80, right hemisphere 69.4
Subiculum
nTPM: 80.9
2042 Male, age 76, both hemispheres 94.1
2438 Female, age 94, left hemisphere 89.9
1901 Male, age 80, both hemispheres 89.6
1977 Female, age 85, both hemispheres 82.2
2729 Female, age 91, right hemisphere 68.9
2619 Male, age 74, both hemispheres 60.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.0
Samples: 197

Max nTPM: 34.5
Min nTPM: 2.4
Std nTPM: 6.2
Median nTPM: 9.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 34.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 31.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 31.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 31.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 28.2
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 26.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 25.9
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 25.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 25.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 25.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 24.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.5
FF:10153-102I9 76 years, female 38.0
FF:10169-103B7 60 years, female 29.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.1
Pig sample Sample description nTPM
Subiculum
nTPM: 10.1
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.4
Sample A Female 11.7
Sample B Female 9.5
Sample C Male 9.4
Sample D Male 9.9
Dorsal hippocampus
nTPM: 14.2
Samples: 4

Max nTPM: 16.4
Min nTPM: 10.8
Sample A Female 16.4
Sample B Female 14.0
Sample C Male 15.4
Sample D Male 10.8
Entorhinal cortex
nTPM: 9.9
Samples: 4

Max nTPM: 12.5
Min nTPM: 7.8
Sample A Female 10.3
Sample B Female 12.5
Sample C Male 8.8
Sample D Male 7.8
Ventral hippocampus
nTPM: 12.9
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.2
Sample A Female 13.6
Sample B Female 14.1
Sample C Male 10.2
Sample D Male 13.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.9
Samples: 4

Max nTPM: 15.8
Min nTPM: 11.0
Sample A Male 15.8
Sample B Male 13.7
Sample C Female 15.0
Sample D Female 11.0
Hippocampal formation
nTPM: 15.4
Samples: 4

Max nTPM: 16.7
Min nTPM: 13.3
Sample A Male 16.7
Sample B Male 15.5
Sample C Female 13.3
Sample D Female 15.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
70539191 Antisense, RP_050324_02_E02, Mouse strain C57BL/6J (56 days, male) 1.0

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