MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA Brain:89.8 nTPM
GTEx:12.5 nTPM
FANTOM5:97.3 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:18.7 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.9
1830 Male, age 51, unknown 105.4
1833 Male, age 53, unknown 103.3
2411 Female, age 72, unknown 95.9
2219 Male, age 76, both hemispheres 95.3
2019 Male, age 18, unknown 94.2
1870 Female, age 42, unknown 87.4
1827 Male, age 72, unknown 66.4
2828 Female, age 72, unknown 63.3
2666 Male, age 74, left hemisphere 60.0
2586 Male, age 75, left hemisphere 37.3
Dorsal raphe nucleus
nTPM: 75.3
2750 Male, age 76, both hemispheres 92.6
2047 Male, age 72, unknown 74.9
2016 Female, age 72, unknown 72.2
2298 Female, age 72, unknown 70.0
1828 Male, age 53, unknown 66.9
Inferior colliculus
nTPM: 76.1
2097 Female, age 72, unknown 82.9
1848 Female, age 42, unknown 79.0
1890 Male, age 53, unknown 73.5
2849 Male, age 72, unknown 69.1
Median raphe nucleus
nTPM: 89.8
2220 Male, age 76, midline 89.8
Periaquaductal grey, anterior
nTPM: 61.9
1947 Male, age 18, unknown 78.4
1795 Male, age 51, unknown 54.7
2502 Female, age 75, unknown 52.7
Periaquaductal grey, dorsal
nTPM: 69.3
2464 Female, age 72, unknown 83.9
1831 Male, age 72, unknown 73.6
2850 Male, age 76, both hemispheres 73.3
1840 Male, age 53, unknown 46.5
Periaquaductal grey, lateral
nTPM: 74.5
2272 Male, age 74, both hemispheres 89.6
2053 Male, age 18, unknown 79.0
2140 Male, age 76, both hemispheres 54.9
Pretectal area
nTPM: 71.6
2667 Female, age 75, unknown 92.5
2273 Male, age 74, both hemispheres 86.6
2407 Male, age 75, both hemispheres 78.6
2224 Female, age 72, unknown 78.1
2316 Male, age 76, right hemisphere 76.6
1944 Female, age 72, unknown 72.3
1815 Male, age 53, unknown 71.8
2825 Male, age 18, unknown 63.1
1816 Male, age 51, unknown 57.6
2007 Male, age 72, unknown 55.4
1817 Female, age 42, unknown 55.2
Red nucleus
nTPM: 86.8
1904 Male, age 53, unknown 110.2
1954 Female, age 42, unknown 108.3
1821 Female, age 72, unknown 95.5
1865 Male, age 51, unknown 94.9
2823 Male, age 76, right hemisphere 94.4
2227 Male, age 72, unknown 90.5
2725 Female, age 75, unknown 88.5
2503 Female, age 72, unknown 81.9
2769 Male, age 72, unknown 81.8
2785 Male, age 18, unknown 74.5
2588 Male, age 74, left hemisphere 61.8
2584 Male, age 75, left hemisphere 59.2
Substantia nigra
nTPM: 68.9
2409 Female, age 72, unknown 88.6
1941 Male, age 53, unknown 79.5
1889 Female, age 72, unknown 78.2
2241 Male, age 72, unknown 76.2
2590 Female, age 75, unknown 68.7
2583 Male, age 75, right hemisphere 67.0
1851 Male, age 51, unknown 62.3
2699 Male, age 18, unknown 61.6
1916 Female, age 42, unknown 60.3
2665 Male, age 74, both hemispheres 46.6
Superior colliculus
nTPM: 72.0
1995 Male, age 72, unknown 92.7
1913 Female, age 42, unknown 92.0
1895 Male, age 76, right hemisphere 90.2
2587 Male, age 74, left hemisphere 80.8
1839 Male, age 51, unknown 73.1
2087 Female, age 72, unknown 65.8
2668 Female, age 75, unknown 59.2
2261 Male, age 18, unknown 58.8
1796 Male, age 53, unknown 56.1
2664 Male, age 75, both hemispheres 51.4
Ventral tegmental area
nTPM: 80.3
2223 Female, age 72, unknown 98.3
2410 Female, age 72, unknown 86.0
2021 Male, age 53, unknown 81.9
2218 Male, age 76, both hemispheres 77.6
1942 Male, age 51, unknown 75.3
1915 Female, age 42, unknown 62.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.5
Samples: 139

Max nTPM: 32.0
Min nTPM: 4.7
Std nTPM: 5.9
Median nTPM: 10.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 31.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 29.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 29.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 26.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 25.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 24.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 23.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 23.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 22.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 22.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.3
FF:10158-103A5 76 years, female 97.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.5
Samples: 4

Max nTPM: 26.4
Min nTPM: 16.6
Sample A Female 20.8
Sample B Female 22.1
Sample C Male 16.6
Sample D Male 26.4
Midbrain
nTPM: 25.0
Samples: 4

Max nTPM: 50.7
Min nTPM: 13.8
Sample A Female 50.7
Sample B Female 19.8
Sample C Male 13.8
Sample D Male 15.8
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 16.0
Min nTPM: 13.6
Sample B Female 16.0
Sample C Male 13.6
Sample D Male 15.1
Superior colliculi
nTPM: 19.1
Samples: 4

Max nTPM: 20.2
Min nTPM: 17.4
Sample A Female 18.7
Sample B Female 20.2
Sample C Male 17.4
Sample D Male 19.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 19.2
Min nTPM: 18.2
Sample A Male 18.2
Sample B Male 18.8
Sample C Female 18.7
Sample D Female 19.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70539191 Antisense, RP_050324_02_E02, Mouse strain C57BL/6J (56 days, male) 0.5

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