MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:116.7 nTPM
HPA Brain:609.7 nTPM
GTEx:116.7 nTPM
FANTOM5:706.7 Scaled Tags Per Million
Pig:272.4 nTPM
Mouse:250.6 nTPM
Allen mouse:12.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 609.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 537.7
2586 Male, age 75, left hemisphere 724.9
2666 Male, age 74, left hemisphere 643.8
2828 Female, age 72, unknown 557.7
2019 Male, age 18, unknown 550.3
1827 Male, age 72, unknown 529.5
2219 Male, age 76, both hemispheres 514.5
2411 Female, age 72, unknown 502.0
1833 Male, age 53, unknown 455.1
1870 Female, age 42, unknown 452.6
1830 Male, age 51, unknown 446.3
Dorsal raphe nucleus
nTPM: 497.6
2047 Male, age 72, unknown 569.7
2750 Male, age 76, both hemispheres 563.1
1828 Male, age 53, unknown 491.0
2298 Female, age 72, unknown 488.9
2016 Female, age 72, unknown 375.4
Inferior colliculus
nTPM: 451.6
1848 Female, age 42, unknown 464.2
2849 Male, age 72, unknown 451.6
1890 Male, age 53, unknown 448.8
2097 Female, age 72, unknown 442.0
Median raphe nucleus
nTPM: 575.1
2220 Male, age 76, midline 575.1
Periaquaductal grey, anterior
nTPM: 560.3
1795 Male, age 51, unknown 571.0
1947 Male, age 18, unknown 556.8
2502 Female, age 75, unknown 553.0
Periaquaductal grey, dorsal
nTPM: 411.1
2464 Female, age 72, unknown 440.9
1840 Male, age 53, unknown 419.4
1831 Male, age 72, unknown 417.9
2850 Male, age 76, both hemispheres 366.0
Periaquaductal grey, lateral
nTPM: 382.1
2053 Male, age 18, unknown 426.8
2272 Male, age 74, both hemispheres 361.9
2140 Male, age 76, both hemispheres 357.7
Pretectal area
nTPM: 537.8
1816 Male, age 51, unknown 723.5
1944 Female, age 72, unknown 672.4
2007 Male, age 72, unknown 664.6
1817 Female, age 42, unknown 655.9
1815 Male, age 53, unknown 609.2
2407 Male, age 75, both hemispheres 486.3
2224 Female, age 72, unknown 467.9
2667 Female, age 75, unknown 459.4
2825 Male, age 18, unknown 430.6
2316 Male, age 76, right hemisphere 385.7
2273 Male, age 74, both hemispheres 360.8
Red nucleus
nTPM: 527.2
2588 Male, age 74, left hemisphere 601.9
2785 Male, age 18, unknown 584.3
2725 Female, age 75, unknown 569.5
2584 Male, age 75, left hemisphere 566.6
1865 Male, age 51, unknown 540.2
1904 Male, age 53, unknown 513.6
1821 Female, age 72, unknown 510.7
2503 Female, age 72, unknown 506.9
2769 Male, age 72, unknown 494.8
2227 Male, age 72, unknown 486.0
2823 Male, age 76, right hemisphere 480.5
1954 Female, age 42, unknown 471.5
Substantia nigra
nTPM: 609.7
1916 Female, age 42, unknown 740.3
1941 Male, age 53, unknown 690.8
2665 Male, age 74, both hemispheres 669.9
1889 Female, age 72, unknown 639.1
1851 Male, age 51, unknown 629.5
2583 Male, age 75, right hemisphere 610.8
2241 Male, age 72, unknown 586.5
2409 Female, age 72, unknown 532.3
2699 Male, age 18, unknown 518.7
2590 Female, age 75, unknown 479.4
Superior colliculus
nTPM: 529.6
2668 Female, age 75, unknown 703.2
2087 Female, age 72, unknown 608.8
2261 Male, age 18, unknown 578.8
1796 Male, age 53, unknown 565.3
2664 Male, age 75, both hemispheres 537.0
2587 Male, age 74, left hemisphere 512.6
1895 Male, age 76, right hemisphere 466.1
1913 Female, age 42, unknown 457.4
1839 Male, age 51, unknown 451.3
1995 Male, age 72, unknown 415.6
Ventral tegmental area
nTPM: 561.7
2410 Female, age 72, unknown 657.2
2218 Male, age 76, both hemispheres 600.5
2223 Female, age 72, unknown 586.3
1915 Female, age 42, unknown 557.1
1942 Male, age 51, unknown 511.3
2021 Male, age 53, unknown 458.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 116.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.7
Samples: 139

Max nTPM: 262.9
Min nTPM: 40.0
Std nTPM: 41.6
Median nTPM: 111.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 262.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 249.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 232.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 220.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 220.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 194.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 188.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 188.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 186.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 183.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 177.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 706.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 706.7
FF:10158-103A5 76 years, female 706.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 272.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 257.7
Samples: 4

Max nTPM: 319.1
Min nTPM: 171.5
Sample A Female 303.4
Sample B Female 171.5
Sample C Male 319.1
Sample D Male 236.6
Midbrain
nTPM: 272.4
Samples: 4

Max nTPM: 391.9
Min nTPM: 195.8
Sample A Female 257.0
Sample B Female 195.8
Sample C Male 391.9
Sample D Male 244.9
Periaqueductal gray
nTPM: 175.0
Samples: 3

Max nTPM: 201.5
Min nTPM: 153.9
Sample B Female 169.7
Sample C Male 201.5
Sample D Male 153.9
Superior colliculi
nTPM: 245.2
Samples: 4

Max nTPM: 332.4
Min nTPM: 127.6
Sample A Female 236.8
Sample B Female 127.6
Sample C Male 332.4
Sample D Male 284.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 250.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 250.6
Samples: 4

Max nTPM: 262.0
Min nTPM: 227.4
Sample A Male 227.4
Sample B Male 258.2
Sample C Female 254.9
Sample D Female 262.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.4
69735759 Antisense, RP_050503_03_E02, Mouse strain C57BL/6J (56 days, male) 17.4
74513872 Antisense, RP_060208_01_E12, Mouse strain C57BL/6J (56 days, male) 7.4

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