MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.1 nTPM
HPA Brain:66.8 nTPM
GTEx:72.1 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:46.8 nTPM
Mouse:21.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.3
2586 Male, age 75, left hemisphere 65.7
2019 Male, age 18, unknown 63.8
2828 Female, age 72, unknown 59.6
1827 Male, age 72, unknown 59.1
1870 Female, age 42, unknown 53.0
2411 Female, age 72, unknown 48.2
1833 Male, age 53, unknown 47.5
2219 Male, age 76, both hemispheres 46.9
1830 Male, age 51, unknown 45.1
2666 Male, age 74, left hemisphere 44.5
Dorsal raphe nucleus
nTPM: 57.8
2298 Female, age 72, unknown 72.7
1828 Male, age 53, unknown 62.4
2047 Male, age 72, unknown 61.3
2750 Male, age 76, both hemispheres 48.3
2016 Female, age 72, unknown 44.4
Inferior colliculus
nTPM: 65.1
2097 Female, age 72, unknown 78.8
1890 Male, age 53, unknown 63.6
1848 Female, age 42, unknown 59.6
2849 Male, age 72, unknown 58.5
Median raphe nucleus
nTPM: 51.3
2220 Male, age 76, midline 51.3
Periaquaductal grey, anterior
nTPM: 61.8
1795 Male, age 51, unknown 64.8
2502 Female, age 75, unknown 62.5
1947 Male, age 18, unknown 58.0
Periaquaductal grey, dorsal
nTPM: 49.4
1831 Male, age 72, unknown 53.9
1840 Male, age 53, unknown 52.5
2850 Male, age 76, both hemispheres 48.8
2464 Female, age 72, unknown 42.3
Periaquaductal grey, lateral
nTPM: 55.7
2272 Male, age 74, both hemispheres 65.2
2053 Male, age 18, unknown 55.0
2140 Male, age 76, both hemispheres 46.9
Pretectal area
nTPM: 66.8
1817 Female, age 42, unknown 87.5
2007 Male, age 72, unknown 85.4
1816 Male, age 51, unknown 81.8
1944 Female, age 72, unknown 79.8
2273 Male, age 74, both hemispheres 66.4
1815 Male, age 53, unknown 66.3
2667 Female, age 75, unknown 63.2
2224 Female, age 72, unknown 62.3
2316 Male, age 76, right hemisphere 48.0
2825 Male, age 18, unknown 47.4
2407 Male, age 75, both hemispheres 46.5
Red nucleus
nTPM: 61.3
2785 Male, age 18, unknown 72.1
2503 Female, age 72, unknown 69.3
1821 Female, age 72, unknown 68.2
2725 Female, age 75, unknown 65.1
1904 Male, age 53, unknown 62.5
2823 Male, age 76, right hemisphere 62.2
1954 Female, age 42, unknown 61.4
2769 Male, age 72, unknown 58.4
2227 Male, age 72, unknown 57.4
1865 Male, age 51, unknown 56.6
2588 Male, age 74, left hemisphere 56.3
2584 Male, age 75, left hemisphere 46.7
Substantia nigra
nTPM: 52.2
1889 Female, age 72, unknown 73.5
1916 Female, age 42, unknown 64.4
2583 Male, age 75, right hemisphere 54.2
1851 Male, age 51, unknown 52.8
1941 Male, age 53, unknown 51.3
2665 Male, age 74, both hemispheres 50.0
2409 Female, age 72, unknown 46.8
2590 Female, age 75, unknown 46.6
2699 Male, age 18, unknown 44.6
2241 Male, age 72, unknown 38.2
Superior colliculus
nTPM: 58.1
2261 Male, age 18, unknown 68.1
1796 Male, age 53, unknown 67.4
2087 Female, age 72, unknown 63.9
2668 Female, age 75, unknown 60.5
1895 Male, age 76, right hemisphere 58.8
1839 Male, age 51, unknown 55.9
2587 Male, age 74, left hemisphere 55.9
1913 Female, age 42, unknown 55.3
1995 Male, age 72, unknown 54.7
2664 Male, age 75, both hemispheres 40.3
Ventral tegmental area
nTPM: 51.7
2218 Male, age 76, both hemispheres 59.2
2410 Female, age 72, unknown 56.7
1915 Female, age 42, unknown 53.3
2223 Female, age 72, unknown 51.1
1942 Male, age 51, unknown 49.3
2021 Male, age 53, unknown 40.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.1
Samples: 139

Max nTPM: 123.8
Min nTPM: 31.1
Std nTPM: 17.9
Median nTPM: 69.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 123.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 115.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 111.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 110.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 109.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 103.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 101.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 100.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 100.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 99.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 99.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.7
Samples: 4

Max nTPM: 48.8
Min nTPM: 32.2
Sample A Female 48.8
Sample B Female 39.2
Sample C Male 46.5
Sample D Male 32.2
Midbrain
nTPM: 42.1
Samples: 4

Max nTPM: 45.7
Min nTPM: 39.1
Sample A Female 42.9
Sample B Female 45.7
Sample C Male 40.6
Sample D Male 39.1
Periaqueductal gray
nTPM: 46.8
Samples: 3

Max nTPM: 56.6
Min nTPM: 40.9
Sample B Female 43.0
Sample C Male 56.6
Sample D Male 40.9
Superior colliculi
nTPM: 44.2
Samples: 4

Max nTPM: 49.5
Min nTPM: 39.6
Sample A Female 49.5
Sample B Female 41.2
Sample C Male 39.6
Sample D Male 46.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 30.8
Min nTPM: 15.4
Sample A Male 30.8
Sample B Male 20.7
Sample C Female 15.4
Sample D Female 19.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69262242 Antisense, RP_050301_01_H01, Mouse strain C57BL/6J (56 days, male) 1.5

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